SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2801

Length: 566 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene2801
TGTGTTTATGTTGTTGGAAAAGACGAATATGATGAACTTGCTTGGCAGAGGTGATATTTGCACTAACTGCATCTGTAAAGGATGTGTGTGCAAAGGCTGCTCCTACAGAACGTGTCTTCCTTGACAAGTATGGAAAAATTTGCCTGTGTCTGGATGAAATCGTTTGGCAGGGAATGCTGGAGAATACAGAGAAGGACCGTGTGAGAAGACTAGCAAGATTGAAGCCTCCCACAGAAGGATAATTCTGTATTCATGTCAGTCTTTATATATAGGATATGTGGCACTCAGATTGATTTGTTGTTTTCTTGATCCTGATATTCAATTTTTGTGAATTGATTTTACTTTTCTGCCCTTGAACTTCTATACTGCAGCTTTTCTGATTTTTCTACCAGTCATCCTGGATTACACTTGTCTAATGCTGTCATTATGTATGATGCATGAGCTGGTTACATATCTTAACAAGCTGTACCAATAACATTAGTTTGGAAATGGCTGATTTATGTAACTGGGATGATCCGAGTTAGATTGTTGAAAAAATTAATCAAAATAAAGGGGTTACCCTCTTT

Ace file of the UniGene biog2_v2.0_unigene2801 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23138	9/9

Source	Descriptions	Term	Type	e value	Identity
AutoFact	COPZ2; Zeta2-COP	-	-	5.0e-14	32%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Clathrin adaptor complex, small chain	IPR000804	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F2DAN2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 80 - 147

Fln protein: CLCCWKRRI**TCLAEVIFALTASVKDVCAKAAPTERVFLDKYGKICLCLDEIVWQGMLENTEKDRVRRLARLKPPTEG*

Protein Length: 81

Fln nts: TGTGTTTATGTTGTTGGAAAAGACGAATATGATGAACTTGCTTGGCAGAGGTGATATTTGCACTAACTGCATCTGTAAAGGATGTGTGTGCAAAGGCTGCTCCTACAGAACGTGTCTTCCTTGACAAGTATGGAAAAATTTGCCTGTGTCTGGATGAAATCGTTTGGCAGGGAATGCTGGAGAATACAGAGAAGGACCGTGTGAGAAGACTAGCAAGATTGAAGCCTCCCACAGAAGGATAA___TTCTGTATTCATGTCAGTCTTTATATATAGGATATGTGGCACTCAGATTGATTTGTTGTTTTCTTGATCCTGATATTCAATTTTTGTGAATTGATTTTACTTTTCTGCCCTTGAACTTCTATACTGCAGCTTTTCTGATTTTTCTACCAGTCATCCTGGATTACACTTGTCTAATGCTGTCATTATGTATGATGCATGAGCTGGTTACATATCTTAACAAGCTGTACCAATAACATTAGTTTGGAAATGGCTGATTTATGTAACTGGGATGATCCGAGTTAGATTGTTGAAAAAATTAATCAAAATAAAGGGGTTACCCTCTTT

Fln Alignment:

Contig2801___LAEVIFALTASVKDVCAKAAPTERVFLDKYGKICLCLDEIVWQGMLENTEKDRVRRLARLKPPTE
F2DAN2_________________LSEVIFAVTSAVKDVCAKP-PTERLFLDKYGRICLCLDEIVWQGLLENTEKDRVRRLIRLKPPVE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
278			33	66	0.997452
281	66			33	0.997452
282			33	66	0.997452
367		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain