SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2738

Length: 1237 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2738 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1778	27/27

Source	Descriptions	Term	Type	Identity
AutoFact	D3-type cyclin (Fragment) n=3 Tax=Populus RepID=A8Y914_POPTR	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	d3-type cyclin	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	cell cycle	GO:0007049	Biological Process	69%
Blast2go	cell division	GO:0051301	Biological Process	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Cyclin D	IPR015451	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin-like	IPR013763	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR95

Fln msg: your sequence is shorter than subject: 329 - 368

Fln protein: DQQHYNLDICDQHDEHLWDDGELVAFAEKETLYVPNPVEKNSAEAKARQDAVDWILKVHAHYGFGPVSAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYIFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGLLPSVVAAAIMLHVIKETELVNPCQYENRLLSAMKVNKDMCERCIGLLIAPESSSLGSFSLGLKRKSSTINIPVPGSPDGVLDATFSCSSSSCGSGQSTPGSYDSNNSSILCISPAVIKKRKLNYEFCSDLHCLED*

Protein Length: 330

Fln nts: GATCAGCAGCATTATAATTTGGACATCTGTGACCAGCATGATGAGCATTTGTGGGATGACGGTGAACTTGTAGCTTTTGCAGAAAAAGAGACCCTCTATGTTCCTAACCCAGTTGAGAAAAACAGTGCTGAAGCTAAAGCTAGGCAGGATGCTGTGGATTGGATTTTGAAGGTTCATGCACATTATGGCTTTGGTCCTGTGAGTGCAGTGCTCTCAATAAACTATCTTGATCGGTTTTTGTCTGCAAATCAATTACAGCAAGATAAGCCATGGATGACTCAACTGGCAGCTGTGGCTTGCCTCTCCCTCGCTGCCAAGATGGATGAGACAGAGGTTCCCCTTCTCCTGGACTTTCAGGTTGAGGAGGCTAAGTATATATTCGAATCTCGCACCATTCAGAGAATGGAATTACTGGTGCTCAGTACCCTTGAATGGCGAATGAGCCCTGTGACACCTCTTTCCTACATTGATCATGCCAGTCGTATGATTGGGTTGGAGAATCACCATTGTTGGATTTTCACAATGCGCTGCAAGGAGATACTGTTGAATACACTCAGAGATGCAAAGTTTTTGGGCCTTCTGCCCTCTGTTGTAGCTGCTGCAATAATGCTGCATGTGATCAAGGAAACAGAGCTTGTTAATCCATGTCAGTACGAGAATCGCCTGCTCAGTGCCATGAAAGTTAACAAGGACATGTGTGAAAGGTGCATAGGACTACTCATTGCCCCTGAATCATCATCCTTGGGCAGTTTCTCTTTGGGTTTGAAAAGAAAGAGCAGCACCATCAATATTCCTGTTCCTGGCAGCCCAGATGGAGTGCTGGACGCTACCTTCAGCTGCAGCAGCAGCAGCTGTGGTAGCGGACAGAGCACCCCAGGGTCATATGATTCCAATAACTCCAGCATTCTCTGCATCTCACCAGCGGTGATAAAGAAGAGAAAGCTTAATTATGAGTTTTGTAGCGATCTTCATTGTTTGGAGGATTAG___TAGATTACCATAAATACAAGTGCTCCTCTATGAAGAACGCTTTGGAAGCAAGCTTTGCTATTAAAACTTCATTTCAACTATACCTATCCAGAATTAAGTGCAAGTTCAGGCCTATAATAGGCAACTATTATAGCTCTATGCCATTATGTCTCGCATGGGAGAAACATATTGTTATTAAATACCATTCAATATGCTTATGATTCATGAATGCTTAAGAGATTCTGCTGCTGTGTGAATATAGGCTTCAATG

Fln Alignment:

Contig2738___DQQHYNLDICDQH-----DEHLWDDGELVAFAEKETLYVPNPVEKNSAEAKARQDAVDWILKVHAHYGFGPVSAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYIFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGLLPSVVAAAIMLHVIKETELVNPCQYENRLLSAMKVNKDMCERCIGLLIAPEXXXXXXXXXXXXXXXSTINIPVPGSPDGVLDATFXXXXXXXXXXXXXXXSYDSNNSSILCISPAVIKKRKLNYEFCSDLHCLED
B8LR95_________________EDQHYNLDICDQHFVSSIDEHLWDDGELAAFAERETLYVPNPVEKNSSEAKARQDAVDWILKVHAHYGFGPVTAVLSINYLDRFLSANQLQQDKPWMTQLAAVACLSLAAKMDETEVPLLLDFQVEEAKYLFESRTIQRMELLVLSTLEWRMSPVTPLSYIDHASRMIGLENHHCWIFTMRCKEILLNTLRDAKFLGFLPSVVAAAIMLHVIKEIELVNPYQYENRLLSAMKVNKDMCERCIGLLIAPESSSLGSFSLGLKRKSSSVNIPIPGSPDGVLDATFSCSSSSCGSGQSTPGSYDSNNSSILCISPAVIKKRKLN-EFCSDLHCLED

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1085	83		16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
386	399	GCT GCT GCT GCT GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain