SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2723

Length: 694 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2723 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2145	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	2-oxoglutarate/malate translocator n=3 Tax=Spermatophyta RepID=B9GF08_POPTR	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	2-oxoglutarate malate translocator	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	92%
Blast2go	sodium ion transport	GO:0006814	Biological Process	92%
Blast2go	malate transport	GO:0015743	Biological Process	92%
Blast2go	oxaloacetate transport	GO:0015729	Biological Process	92%
Blast2go	alpha-ketoglutarate transport	GO:0015742	Biological Process	92%
Blast2go	response to nematode	GO:0009624	Biological Process	92%
Blast2go	oxaloacetate transmembrane transporter activity	GO:0015131	Molecular Function	92%
Blast2go	alpha-ketoglutarate transmembrane transporter activity	GO:0015139	Molecular Function	92%
Blast2go	oxoglutarate:malate antiporter activity	GO:0015367	Molecular Function	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	integral to membrane	GO:0016021	Cellular Component	92%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/sulphate symporter	IPR001898	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	T %	Probability
479		20	80	0.995493
480	20	20		0.99255
482		75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain