SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2703

Length: 462 nt

UniGene Fasta

>biog2_v2.0_unigene2703
TTAATGGGTCAAGGTTTGAGCCTTGTGGTCTAAACCAGCTTTATGCTATGCGATACGGAACTGTCCCAGTTGTCCATGCTGTAGGGGGCCTCAAAGATACTGTAAAACCTTTTGATCCATTTTCAGAGACTGGCCTTGGCTGGACATTTGAATGTGCAGAATCATCTAGGTTAATTCATGCTCTTGGCAATGCCTTGTGGACATATCGCGACTTCAAGCAAAGCTGGCGCGGTATACAAAAGCGTGGTATGAGCCAAGACCTCAGCTGGGACAATGCTGCAAAGCAGTATGAAGAAGTTTTTCTTGCTGCAAAATATCAATGGTAATAAAATCTTGTCACGATGAAGCTGTTCAGGATTGAACACAAATTTTGAATTCATCATGGCATGCAAATGATATATTATTATGAAAGTNTGATACCTTAGAATCTATAAGTGATCAGTACTGCACATAGTCTAGCAG

Ace file of the UniGene biog2_v2.0_unigene2703

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8444	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to starch synthase n=1 Tax=Vitis vinifera RepID=UPI0001984C32	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	starch synthase iib precursor	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Starch synthase.	EC:2.4.1.21	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Starch and sucrose metabolism	00500		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Strictosidine synthase.	EC:4.3.3.2	-	79%

Source	KEGGs	Term	Identity
Blast2go	Indole alkaloid biosynthesis	00901	79%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	79%
Blast2go	Metabolic pathways	01100	79%
Blast2go	Biosynthesis of secondary metabolites	01110	79%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	79%
Blast2go	response to wounding	GO:0009611	Biological Process	79%
Blast2go	glycogen biosynthetic process	GO:0005978	Biological Process	79%
Blast2go	starch synthase activity	GO:0009011	Molecular Function	79%
Blast2go	strictosidine synthase activity	GO:0016844	Molecular Function	79%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPW8

Fln msg: your sequence is shorter than subject: 108 - 760

Fln protein: NGSRFEPCGLNQLYAMRYGTVPVVHAVGGLKDTVKPFDPFSETGLGWTFECAESSRLIHALGNALWTYRDFKQSWRGIQKRGMSQDLSWDNAAKQYEEVFLAAKYQW*

Protein Length: 109

Fln nts: TTAATGGGTCAAGGTTTGAGCCTTGTGGTCTAAACCAGCTTTATGCTATGCGATACGGAACTGTCCCAGTTGTCCATGCTGTAGGGGGCCTCAAAGATACTGTAAAACCTTTTGATCCATTTTCAGAGACTGGCCTTGGCTGGACATTTGAATGTGCAGAATCATCTAGGTTAATTCATGCTCTTGGCAATGCCTTGTGGACATATCGCGACTTCAAGCAAAGCTGGCGCGGTATACAAAAGCGTGGTATGAGCCAAGACCTCAGCTGGGACAATGCTGCAAAGCAGTATGAAGAAGTTTTTCTTGCTGCAAAATATCAATGGTAA___TAAAATCTTGTCACGATGAAGCTGTTCAGGATTGAACACAAATTTTGAATTCATCATGGCATGCAAATGATATATTATTATGAAAGTaTGATACCTTAGAATCTATAAGTGATCAGTACTGCACATAGTCTAGCAG

Fln Alignment:

Contig2703___SRFEPCGLNQLYAMRYGTVPVVHAVGGLKDTVKPFDPFSETGLGWTFECAESSRLIHALGNALWTYRDFKQSWRGIQKRGMSQDLSWDNAAKQYEEVFLAAKYQW
C0PPW8_________________SRFEPCGLNQLYAMRYGTVPVVHAVGGLKDTVKPFDPFSETGLGWTFECAESSRLIHALGNALWTYRDFKQSWLGIQKRGMSQDLSWDNAAKQYEEVLLAAKYQW

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
41		33		66	0.997452
123	12			87	0.992554
125		87	12		0.992554
126	87		12		0.992554
286		83		16	0.994512
296	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain