SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2685

Length: 1560 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2685

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5834	21/42
SustainPine v2.0	sp_v2.0_unigene17067	19/42
SustainPine v2.0	sp_v2.0_unigene78804	1/42

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gb\|ABF59189.1\| unknown protein [Arabidopsis thaliana] gb\|AEE35318.1\| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]	-	-	2.0e-19	40%
FL-Next	tr=Heat shock-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	40%
Blast2go	chaperone -domain containing protein	-	-	6.37961e-27	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	6.37961e-27	59%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q40868

Fln msg: your sequence is longer than subject: 317 - 158

Fln protein: MKDVKDDCFYSVLGLEKTCTTSDVRCAYRKLAKKWHPDKLNAKDSAAADSGTASEAAKMRFQAIQEAYSVLSDNNKRLMYDAGVYDDDDDELGMSSFVGEIATMMAGSKQQDDAPENLDELKAMFLNIVNDDYCKPSTSNKRSSSCLNGTVAGKHQKGTTSSSCEFNEDFLMSGLRSDTGCIGGDGVDSLQDLKEVFMNIVDPEFYASPCTSKMTFSMSSNQNDNKNHWMNGPTTFDELVAETLFPEGGMMGTMLDRSASGNKSSVDLCGEVRKTTSSATVDSRHSKKLKLCQEQRDDSNSLWESEFTYHWSSGFF*

Protein Length: 318

Fln nts: ATGGGGCCCGGTGGGGGAGGGAATAAACGGACAACGCTTCTAGACGCTTCTCCTTTCCCCCACCCATCTCGTTCTCCACCTGCAGCCATTATTTGTGGTGGGGAAGGGCTTTGCGTTGGATCTATGATCGAGGATCTAAATTCAGTCAGCAGGGGCTGAATTTCGAGCTGGGAAGCTTTAGTAAATGAAAATTTCCTTTTTGTGCGGATTTTGGATTTCACGGGAATCTCCTGAAAGCCCTCAGGGAAGAAAGCGTTGCAGGGCGGATTTAGTTGACTATGCAGAAATCGTAAAGTGACAGGTGGCAGTGGTGTTGTGAGGCGAGACTTTGGTTCTGGGGCTGTAGAATTCCAGAGTCAGGCTGTGTGACGCCTAATACGGCGAGGAGATTGGCCGCGGGATTGAGGTGCCTTGTTAGCAAATGATGAAATAATGTCGTTTGCCTTGTTGCCTGGTTGACGTCAGCAAGGCCTGAAGGTGTTGGTGTTTCTTGTGGCCGGGTGGGCTTGCGCTCTAGTGAAGATTTAAATGTGAAA_-_ATGAAGGACGTTAAAGATGATTGTTTTTACTCGGTTTTGGGTCTGGAGAAGACCTGCACGACCTCGGATGTCCGGTGCGCTTACAGGAAATTGGCCAAGAAATGGCATCCGGACAAGCTCAATGCCAAGGACTCTGCGGCAGCCGATTCTGGGACAGCGTCAGAGGCTGCAAAGATGCGATTTCAGGCCATTCAGGAGGCGTATTCTGTCCTTTCTGACAACAACAAACGCCTGATGTACGATGCAGGAGTTTATGATGATGATGACGATGAATTGGGAATGAGCTCCTTCGTGGGAGAAATTGCTACAATGATGGCAGGCTCAAAACAGCAGGACGATGCTCCAGAGAACCTTGATGAATTAAAGGCAATGTTTCTGAACATTGTCAATGATGATTATTGTAAACCAAGCACCAGTAATAAGAGGTCAAGTTCTTGCTTAAATGGAACCGTCGCTGGGAAACATCAGAAGGGCACAACTTCCTCATCTTGTGAATTTAATGAAGATTTCTTAATGAGTGGGTTGCGTTCTGATACTGGCTGCATTGGGGGTGATGGTGTAGATAGCCTTCAAGACCTAAAGGAGGTGTTCATGAACATAGTTGATCCAGAGTTTTATGCGTCTCCGTGTACTAGCAAAATGACATTTAGTATGTCATCGAACCAAAATGATAACAAAAATCATTGGATGAATGGACCAACTACTTTCGATGAGCTAGTAGCAGAAACCCTGTTTCCCGAAGGTGGAATGATGGGCACTATGTTGGACAGATCAGCATCAGGGAATAAAAGTAGTGTTGATTTATGTGGTGAGGTCCGCAAGACCACCTCTTCAGCAACAGTGGATAGCAGGCACAGCAAGAAACTCAAATTATGTCAGGAGCAGAGAGATGATTCTAATTCATTGTGGGAATCTGAGTTTACCTACCATTGGAGTTCAGGGTTTTTCTGA___GTTTCTCATACATTAAAGATAGCAGCTTCTTTGGATCATGTAGTACCAATTTTTACCTTCCCTCTAACAAAAA

Fln Alignment:

Contig2685___FYSVLGLEKTCTTSDVRCAYRKLAKKWHPDKLNXXXXXXXXXXXXXXXXXMRFQAIQEAYSVLSDNNKRLMYDAGVYXXXXXELGMSSFVGEIATMMAGSKQQDDAPENLDELKAMFLNIVNDDY
Q40868_________________FYSILGVNKDSSSAEIRSAYRKLAMKWHPDKWSTDPSSSETAK-------LRFQQIQEAYSVLSDDTKRALYDAGMYEPSEDMDAFCDFLDELSSLIATVKVQSNKDDELLQLQEMFTKMLEEDW

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
190	33		66		1.0
383	20		80		0.995493
393		20		80	0.995493
601	25		75		0.996473
678	14	85			0.993533
739	14		85		0.993533
763	12	87			0.992554
994		62		37	1.0
1004		75		25	1.0
1009			87	12	0.992554
1016	50		50		1.0
1035	87		12		0.992554
1182			10	90	0.90298
1510			50	50	1.0
1555			20	80	0.995493
1560		75	25		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
790	802	ATG ATG ATG ATG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain