SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2671

Length: 1248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2671 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6676	27/27

Source	Descriptions	Term	Type	Identity
AutoFact	SPI2 protein n=1 Tax=Picea abies RepID=Q9SC55_PICAB	-	-	84%
FL-Next	tr=SPI2 protein; Picea abies (Norway spruce) (Picea excelsa).	-	-	84%
Blast2go	peroxidase 72	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine metabolism	00360	78%
Blast2go	Methane metabolism	00680	78%
Blast2go	Phenylpropanoid biosynthesis	00940	78%
Blast2go	Biosynthesis of phenylpropanoids	01061	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	78%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	78%
Blast2go	heme binding	GO:0020037	Molecular Function	78%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9SC55

Fln msg:

Fln protein: MAATSGLRLQFRSVLITGLALMLWLQALHAQSSNGLSPNYYDKSCPEALSIIKSGVEDAVKQEARMAASLLRLHFHDCFVKGCDASLLLDDTANFTGEKTAKPNLNSVRGFGVVDKIKRALEKKCPGVVSCADLLAVAARDSVIISGGPAWEVPLGRRDSRSASKSGANYNIPAPTSTHQTLETKFKLKGLHSLDLVVLSGGHTIGLSRCTSFKARLYNNSGSGKPDPTLDTTYLKQLRIECPQNGTDDNQTVPLDPVTPFKFDVNYYKNIVASKGLLNSDEILYSTNGSKTAAYVKFYTTHTQAFFKQFALSMIKMGNLSPLTGSLGEIRKNCRKMN*

Protein Length: 340

Fln nts: ATGGGGGCGGGGAGCTGGAAAGCTTTATTTATATAAGGTTCATTTCCATACATGGGGAGAATGTAAAGTTCTAGTCTTTTGCATCGTCCGGAAACAGTAGAGGTTTGCTTTAGCTTTCACTGTA_-_ATGGCAGCGACTTCTGGCCTTAGACTGCAGTTTCGCTCTGTGCTTATCACGGGACTGGCACTGATGCTATGGCTCCAGGCATTACATGCTCAAAGCTCTAATGGTTTGAGTCCCAACTATTATGACAAATCCTGTCCCGAGGCCTTGTCTATCATTAAATCTGGTGTAGAAGATGCTGTGAAACAGGAAGCAAGAATGGCTGCTTCTTTGCTTCGTCTGCATTTTCATGACTGCTTTGTTAAGGGTTGCGATGCTTCGCTTCTGCTTGATGACACTGCCAACTTCACGGGGGAAAAGACAGCAAAACCTAACCTGAATTCGGTCAGAGGGTTTGGAGTGGTGGATAAGATCAAAAGAGCACTGGAGAAAAAATGCCCCGGAGTGGTGTCATGCGCTGATCTTCTTGCTGTAGCAGCCCGCGACTCTGTAATCATCAGTGGAGGACCTGCTTGGGAGGTTCCATTGGGCAGAAGGGACTCCAGAAGTGCAAGCAAGAGCGGTGCAAACTACAACATTCCTGCCCCCACATCAACCCATCAGACACTAGAAACCAAATTCAAACTCAAAGGCCTCCATTCACTTGACCTGGTTGTTCTATCAGGGGGTCATACAATAGGTTTATCGCGATGCACAAGCTTCAAGGCAAGGCTGTACAATAATAGTGGTAGTGGGAAACCTGACCCAACATTGGACACCACGTACTTGAAGCAGCTGAGAATCGAGTGTCCCCAAAATGGCACCGACGACAATCAAACTGTACCGTTGGATCCGGTCACTCCTTTTAAGTTCGACGTAAACTACTACAAGAACATTGTGGCCAGTAAAGGGTTGCTCAATTCAGATGAGATTCTTTATTCCACCAATGGAAGTAAAACAGCAGCTTATGTAAAATTCTACACAACCCACACCCAAGCTTTCTTCAAACAATTCGCTCTTTCAATGATAAAGATGGGCAACCTCAGTCCTCTCACCGGGTCCCTGGGAGAAATTAGGAAGAACTGTCGTAAAATGAATTGA___CCGAATTGTTTGGCCATGAATAAGTACCCGACAACAGATTAATAAATGTGATATATGTTGGGGGTATTTGGTTGGCTCTGAATGTCAGTTAATTTAAAAATTTCAAC

Fln Alignment:

Contig2671___MAATSGLRLQFRSVLITGLALMLWLQALHAQSSNGLSPNYYDKSCPEALSIIKSGVEDAVKQEARMAASLLRLHFHDCFVKGCDASLLLDDTANFTGEKTAKPNLNSVRGFGVVDKIKRALEKKCPGVVSCADLLAVAARDSVIISGGPAWEVPLGRRDSRSASKSGANYNIPAPTSTHQTLETKFKLKGLHSLDL-VVLSGGHTIGLSRCTSFKARLYNNSGSGKPDPTLDTTYLKQLRIECPQNGTDDNQTVPLDPVTPFKFDVNYYKNIVASKGLLNSDEILYSTNGSKTAAYVKFYTTHTQAFFKQFALSMIKMGNLSPLTGSLGEIRKNCRKMN
Q9SC55_________________MARASGLRLQFRSVLIAGMALMIWIQALHAQSSNGLSPHYYHKSCPEALSIIKSGIEDAVKKEARIAASLLRLHFHDCFVKGCDASVLLDDTANFTGEKTAAPNKNSVRGFGVVDKIKSELEKKCPGVVSCADLLAVAARDSVVISGGPVWDVPLGRRDSRSASKNRATTNIPAPPQPIRHWKPNSNSKGSNSLGPGLVLSGGHSIGLSRCTSFKARLYNQTGNGKPDPTLDTTYLKQLRIVCPQNGTDDNQTVPLDPVTPFKFDVNYYKNIVASKGLLNSDEILYSTNGSKTAAYVKFYTTHTQAFFQQFAVSMIKMSNLSPLTGTRGEIRKNCRKMN

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
158	80		20		0.995493
176	60	40			1.0
177		40		60	1.0
178	20	80			0.995493
179	20			80	0.995493
790		50	50		1.0
1006	80		20		0.995493
1065	80	20			0.995493
1066		20	80		0.995493
1084	75		25		0.996473
1137	66		33		0.997452
1188	66		33		0.997452
1195	33	66			0.997452
1196		66	33		0.997452
1197		66	33		0.997452
1198		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain