SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2660

Length: 1381 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2660 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4047	31/32
SustainPine v2.0	sp_v2.0_unigene62929	1/32

Source	Descriptions	Term	Type	Identity
AutoFact	Glucoamylase domain containing protein	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	carboxyl-terminal peptidase	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001993	-	0.0	-
Sma3	Domain of unknown function DUF239	IPR004314	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A842

Fln msg:

Fln protein: MAGRQSTFTLDEAEVNRLRQQEQLHLDIENHLKRLNKPAVQSIQSPDGDIIDCVHISHQPAFDHPILQNHTIQMRPSAHPDGLFTTSKTSTPNGPALPQLWHKNGGCPSQTIPIRRTNKQDILRASNIERFGRKKPLSARPPGPKSADPDLLNESGHQHAITFVQGDKYYGAKATINVWDPKIQLSNEFSLSQLWVLAGSFDGDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSDIAMGATIYPVSNYGGSQYDISILVWKDPKEGNWWMQFGNNNVLGYWPAPLFSYLADSASMIEWGGEVVNSEPDGEHTSTQMGSGHFPDEGFGKASYFRNIQVVDGSNNLRAPKGLGIYTEASKCYDVQKGYNAAWGNFFYFGGPGKNEDCS*

Protein Length: 407

Fln nts: C_-_ATGGCTGGGAGGCAGTCTACATTTACCTTGGATGAGGCCGAGGTTAATAGGCTCAGGCAGCAGGAGCAGCTGCATTTAGATATAGAGAACCATCTCAAGCGCCTCAATAAGCCTGCTGTTCAGAGCATTCAGAGCCCTGATGGAGATATCATTGACTGTGTGCACATTTCTCACCAGCCTGCCTTCGACCACCCAATTCTTCAAAATCATACCATTCAGATGAGGCCTAGTGCTCATCCAGATGGACTCTTCACAACTAGCAAGACTTCAACGCCTAATGGCCCTGCGCTGCCCCAGCTGTGGCACAAGAATGGGGGGTGTCCTTCACAGACTATACCCATTCGCAGAACTAATAAACAAGACATTTTGAGAGCAAGCAATATCGAGAGATTTGGGCGGAAGAAGCCATTATCTGCAAGGCCTCCGGGGCCTAAGTCTGCAGATCCTGATTTACTCAATGAAAGTGGGCATCAGCATGCCATAACTTTTGTTCAAGGAGACAAGTACTATGGAGCTAAAGCAACCATAAATGTCTGGGATCCTAAAATTCAGCTTTCAAACGAGTTCAGCTTGTCTCAGTTGTGGGTTCTGGCAGGTTCATTTGATGGGGATTTGAACAGTATTGAAGCAGGCTGGCAAGTGAGTCCAGATCTATATGGGGACAATAACACAAGGCTCTTCACATATTGGACTAGTGATGCTTATCAAGCTACTGGATGCTACAACTTGCTCTGCTCAGGATTCATACAAGTAAACAGTGATATTGCAATGGGCGCCACCATATATCCCGTGTCAAACTACGGGGGATCCCAATACGATATAAGCATCCTTGTTTGGAAGGATCCAAAAGAAGGGAACTGGTGGATGCAATTTGGAAATAACAATGTTTTAGGATACTGGCCAGCACCTCTATTTTCCTACTTAGCAGACAGTGCCAGCATGATTGAATGGGGTGGTGAAGTTGTTAACTCTGAGCCAGATGGGGAACACACCTCCACTCAGATGGGCAGTGGTCATTTCCCAGATGAAGGATTCGGAAAAGCTAGTTACTTCCGGAATATCCAGGTAGTTGATGGATCGAATAATCTGAGAGCTCCAAAAGGATTAGGTATCTACACCGAGGCATCCAAGTGCTATGATGTTCAGAAAGGCTACAACGCCGCTTGGGGTAACTTCTTCTATTTTGGAGGTCCTGGGAAAAACGAAGATTGCTCTTGA___AAACATATCCGCAAGAGCAGGGCAGTGCCTGTGTACCATTGTAATTTTTCTATAATTGCCTCTCTGCTTGCAAGCTTGCAAGACAGTACTCCTACCTCTCATGAAATACAATATATTCTCTTCCTCAGAGATTGTAGATGCTCTGCCTCTGTGACAGTAGTC

Fln Alignment:

Contig2660___IENHLKRLNKPAVQSIQSPDGDIIDCVHISHQPAFDHPILQNHTIQMRPSAHPDGLFTTSKTSTPNGPALPQLWHKNGGCPSQTIPIRRTNKQDILRASNIERFGRKKPLSARPPGPKSADPDLLNESGHQHAITFVQGDKYYGAKATINVWDPKIQLSNEFSLSQLWVLAGSFDG-DLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSDIAMGATIYPVSNYGGSQYDISILVWKDPKEGNWWMQFGNNNVLGYWPAPLFSYLADSASMIEWGGEVVNSEPDGEHTSTQMGSGHFPDEGFGKASYFRNIQVVDGSNNLRAPKGLGIYTEASKCYDVQKGYNAAWGNFFYFGGPGKNEDC
D5A842_________________IHEHLRRINKPAVKSIQSSDGDIIDCIHRHKQPAFNHPLLKKHKIQDLPE-RPSKFRPAPVNRTSFSVHAAQTWHLAGFCPEGTIPVRRTFAEDLMRADSPKRYGRKSHRAAR----FDQKPDV-NGFGHEHAIAYVQGEEYYGAKATINVWAPRIETLNEFSLSQLWVLSGSFDGSDLNSIEAGWQVSPELYGDTRPRLFTYWTSDSYQETGCYNLLCSGFVQTNNKIAIGASISPVSEFADTQYDITILIWKDPKEGNWWMEFADRTLVGYWPSELFTHLADHANMIEWGGEIVNTEAGGEHTSTQMGSGHFAEEGFGKASYFRNLEIVDSDNSLRGVSSMLTLAEHTYCYNIQNRYNIEWSNHFYFGGPGSNPRC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain