SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2651

Length: 1466 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2651

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7000	26/28
SustainPine v2.0	sp_v2.0_unigene65311	2/28

Source	Descriptions	Term	Type	Identity
AutoFact	Putative translocon-associated protein alpha subunit n=1 Tax=Jatropha curcas RepID=C9E1T6_9ROSI	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	translocon-associated protein subunit alpha	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	78%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Translocon-associated protein (TRAP), alpha subunit	IPR005595	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQA4

Fln msg: your sequence is longer than subject: 258 - 69

Fln protein: MAISRFLAFLLLSLLLVGVCHVASSADVVDAQDEGGELGIVGDGVQDFGDAVLGTAPGIDTVCFFPKNSDKAVPAGEETELLVGINNDGEASLKVLSIKASLHLPFDHRLFVQNLTLQEFFNATVPPSAQATFPYSFTVSKFLQPGSFDLAGSILYEVDEQIFQTVFYNGTVEVVEASGILSIETVFLITLGLALLCLFGIWAYGQIQRFSKKTKRTTKVEVGTGNSDITNEWLQGTAFMQKLSNGQSRSMKSKKKK*

Protein Length: 259

Fln nts: ATGGGGGCTCAACAAAACCCTAGATTTTCACCACCCACATATGACCACAGCGTGAACATCTAGGGCGGCGCCCGCTAGTTTAGGGTCTGCCCTACACATACCCAATCCAGCCGTGGCACACATAACTAGCACAGTTGACCAGTGGCGTCTGATGACAAAGTCCGCATAAGCTTCGATTTCAGCCTCTCTATAAAAGCCTCCAAGCTTAAGCCTAGAGGAATCATTTTATATACCCAGGTAGCAAGAAGTTTTTACAAGCAAATCTCAGCC_-_ATGGCGATCTCTCGATTTCTCGCGTTTTTACTGCTCTCACTGCTTTTAGTTGGCGTATGTCATGTGGCATCTTCTGCTGATGTTGTGGATGCCCAAGACGAGGGAGGGGAGCTCGGAATTGTTGGAGATGGTGTCCAAGATTTTGGGGATGCAGTCCTTGGAACAGCACCTGGAATAGATACAGTTTGTTTTTTCCCAAAAAACTCTGACAAAGCGGTTCCAGCAGGAGAGGAAACAGAATTACTTGTTGGAATAAATAATGACGGTGAAGCTTCTTTGAAGGTGCTTTCCATAAAAGCTAGCCTTCACTTGCCATTTGATCACAGGCTATTTGTGCAGAACCTCACATTACAGGAATTTTTCAATGCCACCGTGCCTCCTTCAGCACAAGCAACCTTTCCATATTCCTTTACAGTCAGCAAATTCTTGCAGCCAGGCTCATTTGACCTCGCTGGTAGCATCTTATACGAGGTAGATGAACAGATATTTCAGACTGTATTTTACAATGGTACTGTTGAAGTTGTTGAGGCCAGTGGCATTCTCAGCATAGAAACAGTTTTTCTGATTACGCTCGGACTTGCTCTGCTCTGTCTTTTTGGGATATGGGCTTATGGACAAATACAACGCTTTTCTAAGAAAACAAAGAGGACAACAAAAGTAGAAGTTGGAACCGGAAATTCAGATATAACAAATGAGTGGCTGCAGGGAACTGCATTCATGCAGAAGCTTTCAAATGGTCAATCTCGATCAATGAAGTCAAAGAAAAAGAAATAA___ATAACAATAGTCTGGTTGCTGGTTCCTTGTGGAATTTATGGCAAGCCACTTGTTATTGGCTGCAGTGGTAAATATGAGCAGTTTTGTAGTCAACATGTAATGTAGACAATCAAGGTGAGGAGGTATAGATTTAGAGTTAGGTTAGTTGCGAATTGATGACCCGCTTCCCTCATTGTTCCATTGCAAATTTAAAGGTGTGAGATTTTTAGGTTTCATATTTAATTTCCTTAAAGCTAATAGTGCTAATTTGGCATCACTGTCTGAGTTGATGTTGTCAACGAAGTGTTTTGATTTGTACTTGATTTCAATTTCATTTAGTTGGATTATAAGAATTATGATCCTTAATTTGATGAATTCAGTGGCATCATGGCCTTCCAAATGACTGGTTTCACCGAATTATTTACATGTTAGACATTGTAGCG

Fln Alignment:

Contig2651___MAISRXXXXXXXXXXXVGVCHVASSADVVDAQDEGGELGIVGDGVQDFGDAVLGTAPGIDTVCFFPK
C0PQA4_________________MAISRLLAFLLVSLLLVGICQVASSTEVVDAQDEGGELGIVGDGVQDFGDAVLGTAPGVDTVCFFPK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
759		80		20	0.995493
760	80		20		0.995493
762	80		20		0.995493
799	16			83	0.994512
802			16	83	0.994512
803			16	83	0.994512
848			80	20	0.995493
875		16		83	0.994512
977	14		85		0.993533
981		85	14		0.993533
982	85		14		0.993533
1002	71		14	14	0.984337
1021	12	87			0.992554
1023		87	12		0.992554
1025	87		12		0.992554
1179	87	12			0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain