SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2647

Length: 1120 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2647

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene668	14/16
SustainPine v2.0	sp_v2.0_unigene23041	2/16

Source	Descriptions	Term	Type	Identity
AutoFact	putative S-acyltransferase [Arabidopsis thaliana] sp\|Q0WQK2.1\|ZDHC9_ARATH RecName: Full=Probable S-acyltransferase At3g26935; AltName: Full=Probable palmitoyltransferase At3g26935; AltName: Full=Zinc finger DHHC domain-containing protein At3g26935 dbj\|BAF	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	probable s-acyltransferase at3g26935-like	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWY1

Fln msg: your sequence is shorter than subject: 241 - 449

Fln protein: TTLLCVYVFTFCWGIYQENYGSR*CYSLESYVKNTCVNCWLILYTFFSVWFVGGLTVFHLYLISTNQTTYENFRYRYDRRANPYNKGVIQNFKEIFFTSVPPSKNNFRAKLQNDSTLQDTSAAPSGGNFLSPNMGKGGIDLEIGNKPSWPSVGAEVLADFEAHESNGGLENKDGYEDSFAHSSRTLPVESAEGRGGIHPRRSSWGRKSGSWEITPDILALAAGVSEANRVSGDITPPGNR*

Protein Length: 242

Fln nts: CAACAACGCTGTTGTGCGTTTATGTATTCaCCTTTTGTTGGGGTATATATCAAGAAAATTATGGTAGCAGATGATGTTACAGTCTGGAAAGCTATGTCAAAAACACCTGCGTCAATTGTTGGCTCATACTATACACATTCTTTTCAGTTTGGTTTGTTGGTGGACTTACGGTATTTCATCTCTATCTGATCAGTACAAATCAGACTACATATGAGAATTTCAGATATCGGTATGATAGAAGAGCAAATCCTTACAACAAAGGAGTAATACAGAATTTCAAAGAAATATTTTTTACAAGTGTTCCACCGTCAAAGAATAATTTTCGAGCCAAGTTACAGAATGATTCTACACTGCAAGATACTTCTGCTGCTCCTTCAGGGGGGAACTTTCTCAGTCCCAACATGGGCAAAGGAGGAATTGACCTTGAAATAGGTAATAAGCCTTCATGGCCATCCGTTGGTGCTGAAGTATTGGCAGATTTTGAAGCACATGAAAGCAATGGTGGATTAGAAAACAAAGATGGTTATGAGGACTCTTTTGCTCATTCAAGCCGTACACTTCCCGTGGAAAGTGCAGAGGGAAGAGGTGGAATACATCCAAGGCGTTCAAGTTGGGGCCGTAAGAGTGGGAGTTGGGAAATAACACCAGATATTCTTGCCTTGGCTGCTGGAGTTAGTGAAGCAAATCGAGTTAGTGGAGACATCACTCCTCCAGGAAACCGATAA___TTTCTGGTAAGTTGACTGTTTAAAAATGCATGTTGTAGACAGCTATATGTTTGTCGACGTGATAAGTTTTTTCTGCTGTTTAAAACGCAGCATCATATTTCAAGCAACCAAATACATGCTCTTGCAAAGGGTGTCATTCGCCAGTCAACAAAAAATCGATCAACAATGTTCAGGCAACATGGTCAGTTGTTTCAGGAATAATTTTCAAGATTGTGAATTTGTATTTTAGAATGCAAATTTAAAAAATTGGCTGACTACATCAGAAGAATATCAATACGGCTTACATTCTTGTAAGTAGGATATCGGGAATTTACAAAATGACCTTTCATTTAGGTCGTGATGTGCAAGTCAAGGACTTAAATTGGACTGCTGCATGTATGACCTTTTCTTGGAGG

Fln Alignment:

Contig2647___TTLLCVYVFTFCWGIYQENYGSR*CYSLESYVKNTCVNCWLILYTFFSVWFVGGLTVFHLYLISTNQTTYENFRYRYDRRANPYNKGVIQNFKEIFFTSVPPSKNNFRAKLQNDSTLQDTSAAPSGGNFLSPNMGKGGIDLEIGNKPSWPSVGAEVLADFEAHESNGGLENKDGYEDSFAHS-SRTLPVESAEGRGGIHPXXXXXXXXXXXXEITPDILALAAGVSEANRVSGDITPPGNR
A9NWY1_________________TTLLCIYVFSFCW-VYIKKIMVADDVTVWKAMSKTPASIVLILYTFFSVWFVGGLTVFHLYLISTNQTTYENFRYRYDRRANPYNKGVIHNFKEIFFSSIPPSKNSFRAKLQHDSTLQDTSADP-GGNFLSPNMGKGGIDLEIGNKPSWPTVGAEALADFDEHESNGGLENKDGYEDSFAHALSRTLPVESAEGRGGIHPRRSSWGRKSGSWEITPDILALAAGVNEANRVSGDITPPGNR

SNPs (tot: 5)

Position	A %	G %	T %	Probability
973	50		50	1.0
975	50	50		1.0
976	50	50		1.0
1052	66		33	0.997452
1053	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain