SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2645

Length: 1503 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2645 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7842	44/44

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SAK5_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	amino acid binding	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	84%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	84%
Blast2go	stromule	GO:0010319	Cellular Component	84%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	84%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU80

Fln msg:

Fln protein: MLCQIAVSSWVANKMANTSVCAVGFVPVTSKTSGYADLCMPASRLHCALATKLRFNGFSVSQVRIPSHHRLSCHAEINPSSVTMPTLEGGSSDSNVEPIPKVVIDQDSDPDATVVEITFGDRLGALLDTMAALRDLGLNVVKANVFLDSSGKHNTFSITRVDTGRKVDDPESLEQIRLTILNNLLKYHPESSAQLALGEAFGIMPPKEKPDVDIATRVRIYDDGPNRSLLYIETADRPGLLVEIVKSLSDISVAVESGEFDTEGLLAKAKFHVSYRGSALVKPLQQVVVNSLRYFLRRPTTEESSF*

Protein Length: 308

Fln nts: ATGGGGGAGGTCACATGTTCGAACCTTGAGGTCATCAACGCACAGGACACGCAACCCAAACCAAATTTAGACAATAATTTGCTTCTGAACCACTCAATCTTCATCCTAGCCTCTAATGGGGAAGATGATGTGAAAAAGAAAACAACAACTATCTTCGGCTGCC_-_ATGCTCTGTCAAATTGCGGTGTCCAGCTGGGTTGCGAACAAAATGGCCAATACGTCTGTCTGTGCAGTCGGGTTCGTTCCCGTGACGTCAAAAACCAGTGGGTATGCAGATCTGTGCATGCCCGCTTCCCGTTTGCATTGCGCCCTGGCTACCAAGCTTCGGTTTAATGGGTTTTCGGTGTCGCAGGTTCGAATCCCATCGCATCACAGATTATCATGTCATGCTGAAATAAATCCTTCCAGTGTGACAATGCCAACTTTGGAGGGGGGCAGTAGTGACAGCAATGTTGAACCAATACCAAAAGTCGTGATAGATCAAGATTCAGATCCAGATGCAACAGTGGTCGAGATCACTTTTGGAGATCGTCTGGGTGCTCTTCTTGATACAATGGCGGCCCTTAGAGATCTGGGTTTGAATGTTGTGAAAGCAAATGTGTTCTTGGACTCTTCTGGCAAGCACAACACATTCTCTATAACCCGAGTGGACACAGGCAGGAAAGTGGATGATCCAGAATCACTGGAACAAATACGTCTTACTATTTTAAACAATTTATTGAAGTATCATCCAGAATCTTCTGCTCAATTGGCCTTGGGAGAGGCATTTGGGATTATGCCCCCAAAAGAAAAGCCTGATGTGGATATTGCTACACGCGTACGTATATATGATGATGGTCCAAACCGCAGTTTGCTTTACATTGAAACAGCTGATCGACCTGGTTTGTTGGTGGAGATTGTAAAATCACTATCTGATATCAGTGTAGCTGTTGAATCTGGTGAATTTGATACGGAGGGATTGCTGGCCAAAGCAAAGTTTCATGTCAGCTACCGGGGTAGTGCACTCGTCAAGCCTCTGCAGCAGGTTGTGGTTAACAGTTTAAGATACTTCCTAAGGAGGCCTACAACTGAGGAGAGTAGTTTCTAA___AGTTTCTATATTTACTCGTCATAGTATTAGTAACTGCAGAGAATGCAGCTTTGAAATACTCTTGACATTGTACAGTAGTTGTGCATAGTGACATTGAAGCAACTAGCCCAAGCGTGCCTGCAAAAAGCATTTTCAGCAGCGAAACTATTAGTTGTCCTCTTATTACCCAGTGAGGCCCAAACACGATTTTCTCATTTTTATCTGTTCAAATTTGAAAATCATTTACATGCATACAGTAATCATTTTGAAGTCAATCCACCCCTGCCATCCGTTTGTCATCGTAGACATATATTCATATGGTTGTTGCTTCAAGTGAGAGTCCGCTTATAAGTTTAACATCATCTCAGTCTTTCAATAATTGAACTGGTTTTACATATTATGAGCACTCTCAATGCAAAATGAGTGCAATGACAGCTATA

Fln Alignment:

Contig2645___MLCQIAVSSWVANKMANTSVCAVGFVPVTSKTSGYADLCMPASRLHCALATKLRFNGFSVSQVRIPSHHRLSCHAEINPSSVTMPTLEGGSSDSNVEPIPKVVIDQDSDPDATVVEITFGDRLGALLDTMAALRDLGLNVVKANVFLDSSGKHNTFSITRVDTGRKVDDPESLEQIRLTILNNLLKYHPESSAQLALGEAFGIMPPKEKPDVDIATRVRIYDDGPNRSLLYIETADRPGLLVEIVKSLSDISVAVESGEFDTEGLLAKAKFHVSYRGSALVKPLQQVVVNSLRYFLRRPTTEE
A9NU80_________________MLCKIAVSNWVANKMANTSVCAVGFVPVTPKTSGYGDLSMPASRLHCDPAPKLRFNGLSVSQVRIPSHHRLSCLAEINPSSATMATLEGGSDDSDVVPIPKVAIDQDSDPNATVVEVTFGDRLGALLDTMGALRDLGLNVVKANVFLDSSGKHNTFSITRADTGRKVDDPEALEQIRLTIINNLLKYHPESSAQLAMGEAFGIVPPKEKPDVDISTRIHIYDDGPNRSLLSIETADRPGLLVEIVKTLSDISVAVESGEFDTEGLLAKAKFHVSYRGSALIKPLQQVVANSLRYFLRRPTTEE

SNPs (tot: 4)

Position	A %	C %	G %	Probability
1403		14	85	0.993533
1404	85	14		0.993533
1405	85	14		0.993533
1406		14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain