SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2637

Length: 1664 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2637

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6979	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	dioxygenase-like protein [Arabidopsis thaliana] dbj\|BAB11066.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM65524.1\| unknown [Arabidopsis thaliana] gb\|AAP37672.1\| At5g48020 [Arabidopsis thaliana] dbj\|BAE99693.1\| hypothetical protein [Arabidopsis	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	0.0	80%
Blast2go	binding	GO:0005488	Molecular Function	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR003612	-	0.0	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A952

Fln msg: your sequence is longer than subject: 392 - 270

Fln protein: MEVPVIDLEPYLKFTGRSGCGSDSKCDPIEPACNPNGELDDSPDLKSLCEQVAESLKQTGALVVRDPRCPAEVNDRFLDMMETYFEKPADFKRQQERPHLHYQVGVTPEGVELPRAAVDNDMQMKIQDFPEEYRPHIPVGADPKWRYMWRVGPRPLETRFKELNSDPVVPEGFPEWADTMDGWGSTMISAVEVVAEMAGIGFGLSKDSFTSLMQQGPHLLAPTGSDLSRHGKEGTVFAGYHYDLNFLTIHGRSRFPGLYIWLRNGQKVEVRVPIGCLLIQAGKQLEWLTGGDCRAGMHEVVVTKRTLAAIEASRQAGKSLWRVSSTVFGHIASDAMLQPLGHFAKSPLAQNYPPICAGDFVELELAAINLKGKQDGILNLENGNCEQQTVA*

Protein Length: 393

Fln nts: TGGCAGCATTAGAGAGCGAATGCCTCCACAGCGAGCAGAGGGAATAAGAATCAGAGGTTTGTAAACTTTGTTTGCATATCAGAAACCCTGCCAAGGACCAGGGCTATTATAAAGAAACGTCCAAAGCCACCACATCCTTATTGGGTGTTTTAGGAA_-_ATGGAGGTCCCTGTGATTGATTTGGAGCCATACTTGAAATTCACGGGCAGATCTGGATGTGGGTCTGACTCCAAATGTGACCCAATCGAGCCTGCCTGTAACCCAAATGGCGAACTCGACGATAGTCCGGATTTGAAGAGTTTATGTGAGCAAGTGGCTGAGTCTCTGAAACAAACAGGGGCATTGGTGGTCAGAGATCCGAGGTGCCCAGCGGAGGTTAACGACAGGTTTCTGGACATGATGGAAACGTATTTTGAAAAACCAGCTGACTTCAAGCGCCAACAGGAGCGCCCACATCTTCATTATCAGGTAGGAGTGACACCAGAAGGAGTTGAGTTGCCTAGAGCTGCAGTAGACAATGATATGCAAATGAAAATCCAAGATTTTCCAGAGGAATATCGACCTCATATTCCTGTTGGTGCTGATCCCAAATGGAGATACATGTGGAGAGTGGGCCCTCGACCACTGGAGACACGTTTTAAGGAGTTAAATTCTGATCCTGTAGTGCCAGAAGGGTTCCCAGAGTGGGCAGATACTATGGATGGATGGGGTTCTACGATGATATCTGCTGTCGAGGTTGTGGCGGAGATGGCAGGTATTGGGTTTGGGCTTTCAAAAGATTCATTTACTTCACTGATGCAACAGGGACCTCACTTGCTCGCTCCTACAGGGAGTGATCTTTCAAGGCATGGAAAAGAAGGGACTGTATTTGCAGGTTACCATTATGATCTTAACTTTCTGACTATCCATGGTCGCAGTAGATTCCCTGGACTCTACATTTGGTTGAGAAATGGTCAAAAAGTTGAAGTCCGTGTCCCCATTGGCTGCCTGTTGATCCAAGCTGGCAAACAGCTTGAGTGGCTTACAGGGGGTGATTGCCGGGCTGGAATGCATGAAGTTGTTGTCACGAAAAGAACTCTTGCAGCTATTGAAGCGTCAAGGCAGGCTGGAAAGAGCTTATGGAGGGTTTCTTCCACTGTTTTTGGACACATTGCTTCTGATGCAATGTTACAGCCGCTTGGTCACTTTGCAAAGTCGCCTCTTGCACAAAACTATCCTCCCATATGTGCTGGGGATTTTGTTGAGCTAGAACTTGCAGCCATAAATTTGAAGGGGAAGCAAGATGGCATCTTAAATCTAGAAAATGGGAACTGTGAGCAACAAACAGTGGCATAA___TATTATACCAGAAGTGTTGATGGTTCTTTGCAACTAGAAGAAAATCAGAATAGCCTCTGAAGATTATAATTGGTCTCTACAGTGTGAAATTTCGGTTCTATTTGTATTCTGTTCTACTTTGCTGCAATAAAGAATCAAGTACACGGGTTCAGCTTACAGTCATTGCGTGTAAATATTCTGATACATTTGGTACATTTGAGTCTTTGACGGCATGACTAATTTCTCAAGCACAAAATGTGTAAACCAGAGAACTGTAAACGTGAATGATGTTCTCATCTAAAGGGTGCCAATATGTAGCCTTGGTAGTTTTACCAGTGAAAACTTGATAATTG

Fln Alignment:

Contig2637___MQMKIQDFPEEYRPHIPVGADPKWRYMWRVGPRPLETRFKELNSDPVVPEGFPEWADTMDGWGSTMISAVEVVAEMAGIGFGLSKDSFTSLMQQGPHLLAPTGSDLSRHGKEGTVFAGYHYDLNFLTIHGRSRFPGLYIWLRNGQKVEVRVPIGCLLIQAGKQLEWLTGGDCRAGMHEVVVTKRTLAAIEASRQAGKSLWRVSSTVFGHIASDAMLQPLGHFAKSPLAQNYPPICAGDFVELELAAINLKGKQDGILNLENGNCEQQTV
D5A952_________________MRMKIQEVPEEYRPHIPVGADPKWRYMWRVGPRPLKTRFRELNSDPVVPEGFPEWADTMDGWGSTMISTVEVVAEMAGIGFGLPKDSFTSLMLQGPHLLAPTGSDLSRHGKEGIVFAGYHYDLNFLTIHGRSRFPGPYIWLRNGQKVEVRVPVGCLLIQAGKQLEWLTGGDCLAGMHEVVVSKRTLAAIEAARQGGKSLWRVSSTVFGHIASDAILQPLGHFANSPLAQNYPPICAGDFVELELAAINLKGKQDGVLDLENGNCEQQTV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
746			66	33	0.997452
937		25		75	0.996473
1046	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain