SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2603

Length: 1914 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2603

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17198	31/51
SustainPine v2.0	sp_v2.0_unigene18243	2/51
SustainPine v2.0	sp_v2.0_unigene35791	17/51
SustainPine v2.0	sp_v2.0_unigene79590	1/51

Source	Descriptions	Term	Type	Identity
AutoFact	DUF791 multi-domain protein	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	major facilitator superfamily domain-containing protein 5	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF791	IPR008509	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPG0

Fln msg:

Fln protein: MELFYYVVFGVLTAIVAVFELSKSNKDRITTPSAFNSFKNNYLVVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGRLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPEYKILMIGRILGGIATSLLFSAFESWLVAEHFKRSFDPQWLSFTFSKAIFLGNGLVAIISGLFANTLADTLGFGPVSPFDAAACFLAIGMAIIFSTWTENYGDPSENKDLLTQFKGAATAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEQDIPHGFIFATFMLSSMLGSSLASRLLARQTVKAESYMQIVFLVAAGSFLLPLITTFLLEPSTEKGGSITPGGRLQLLGFCVFEACVGIFWPSIMKMRSQYIPEESRSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCAIFLFMASVLQRRLMVVAESHKTKSLDTWGATKERDTEAEPLNL*

Protein Length: 465

Fln nts: CCGCGTGCCGCTGCTGAATCTCTATATGTTCAGTCCTTGGCTCAATATCCTGAACCCTCATTCGTCTCTGTCTCCCTGCCATTGTTGCAATTCTCTGCGCAGATCCACCTGCGCTCTCATTGGATTCGCATTTTCCTCGTTTTTCCCGATCGATTGATTAGTTTTTGAGGTCACGGCTGTGCGGATATCTGAGCATCCAGGGTTTAAGGAATTGGAGATCTGAAAAGGCCAGGGCCAGA_-_ATGGAGCTCTTTTACTATGTCGTTTTTGGAGTACTGACCGCCATTGTGGCAGTGTTTGAGCTCAGCAAGAGCAACAAAGATCGAATTACGACTCCTTCAGCGTTCAATTCGTTCAAGAACAATTATCTCGTGGTTTACAGTCTTATGATGGCTGGAGATTGGTTACAAGGGCCCTACGTTTACTATCTTTACAGCACGTATGGTTTCGGCAAAGGAGATATTGGAAGACTCTTCATTGCAGGCTTCGGGTCATCTATGTTATTTGGCACGATTGTGGGATCTTTAGCTGATAAACAGGGTCGGAAGAGGGCTTGTATAACATACTGCATAACGTATATATTGAGTTGTATTACAAAGCATTCTCCTGAGTACAAAATATTGATGATTGGCCGTATTCTTGGAGGCATTGCCACATCTCTTTTATTTTCAGCTTTTGAATCATGGCTTGTTGCTGAACATTTCAAGAGGAGTTTTGATCCACAGTGGTTATCATTCACCTTTTCAAAGGCAATATTCCTTGGCAATGGTCTTGTAGCCATTATCTCTGGGTTGTTTGCCAATACCCTTGCTGACACTCTAGGCTTTGGTCCAGTTTCTCCGTTTGATGCTGCAGCATGCTTCTTAGCTATAGGGATGGCCATTATTTTCTCCACCTGGACAGAGAACTATGGAGATCCTTCAGAGAATAAGGATCTACTTACTCAGTTCAAGGGTGCTGCCACAGCTATTGCTTCAGATGAGAAGATTGCATTGTTGGGAGCTATACAGTCCTTATTTGAAGGTTCAATGTACACATTTGTATTTCTTTGGACACCTGCTCTGAGCCCAAATGAACAGGATATTCCTCATGGATTCATATTTGCAACATTTATGTTGTCTTCAATGCTGGGAAGTTCCCTTGCCTCTAGACTCCTGGCCCGCCAAACAGTCAAGGCGGAGAGCTACATGCAGATTGTATTCCTTGTTGCTGCAGGATCCTTCCTCCTCCCTCTCATAACTACCTTCCTTTTAGAGCCCAGCACAGAAAAAGGTGGAAGCATTACACCAGGAGGGCGTCTCCAGCTTCTTGGTTTCTGTGTGTTTGAGGCCTGTGTGGGAATTTTCTGGCCCTCGATTATGAAAATGCGATCACAATACATTCCTGAGGAGTCTAGGAGCACAATTATGAACTTCTTCCGGATACCTTTGAACATATTTGTCTGTGTTGTGCTTTACAATGTCAATGCCTTCCCAATCACAGTCATGTTTGGTATGTGTGCCATCTTCCTCTTCATGGCATCAGTTCTCCAAAGGCGGCTCATGGTTGTTGCAGAGAGTCACAAGACAAAATCTCTAGATACTTGGGGTGCAACCAAGGAGCGGGATACAGAGGCAGAGCCCCTCAATCTCTGA___AATGAAGAAGTTTTGGAGAAGGTAACTTGAAATATTTGCATGGGTTGTGAAAAGAGTCATCGACAATTCCCTTGCAAAAATTGTATTCTTGGGCTTGGCCCATGAACTGTTTCTGCTAAATCATTTTGTCACATAAAATAATAGGCAGTTTTATTCATCTATTGGAGAAGGTAAAGAACTTATTCATTGTAGAACTTCAGTTGGAGATATTAATGTTTTTTGTCTAACCGATTAAAGATCCCTCGGTAGACAATTATTATAAGGTGTAATTTTGTTGTGGAAT

Fln Alignment:

Contig2603___MELFYYVVFGVLTAIVAVFELSKSNKDRITTPSAFNSFKNNYLVVYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGRLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPEYKILMIGRILGGIATSLLFSAFESWLVAEHFKRSFDPQWLSFTFSKAIFLGNGLVAIISGLFANTLADTLGFGPVSPFDAAACFLAIGMAIIFSTWTENYGDPSENKDLLTQFKGAATAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEQDIPHGFIFATFXXXXXXXXXXXXXXXXXQTVKAESYMQIVFLVAAGSFLLPLITTFLLEPSTEKGGSITPGGRLQLLGFCVFEACVGIFWPSIMKMRSQYIPEESRSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCAIFLFMASVLQRRLMVVAESHKTKSLDTWGATKERDT
B8LPG0_________________MELFYYVVFGILSAIVAVFELSKNNKDRISTSSAFSSFKNNYLVVYSLMMAGDWLQGPYVYFLYSQYGFDKGDIGRLFIAGFGSSMLFGTIVGSLADKQGRKRACITYCITYILSCITKHSPQYKVLMIGRILGGIATSLLFSAFESWLVAEHFKRGFDAQWLSLTFSKAIFLGNGLVAILAGLFANTLADTLGFGPVSPFDAAACFLAIGMAIILSTWTENYGDPSESKDLLTQFKGAAIAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNEQDIPHGFIFATFMLSSMLGSSLASRLMARQAVKVEGYMQIVFLVSSASFLLPLITTFILEPSTEKGGSITAGGRLQLLGFCVFEACVGIFWPSIMKMRSQYIPEESRSTIMNFFRIPLNIFVCVVLYNVNAFPITVMFGMCAIFLFMASVLQRRLMVVAESHKTKSLDTWVVTKERDT

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
306		87	12		0.992554
307	87		12		0.992554
416	80		20		0.995493
466	83		16		0.994512
544	85		14		0.993533
980	85		14		0.993533
994		28		71	1.0
1217	12	87			0.992554
1582		80		20	0.995493
1583			20	80	0.995493
1584			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain