SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2591

Length: 928 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2591 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3945	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAA21205.1\| putative protein [Arabidopsis thaliana] emb\|CAB80013.1\| putative protein [Arabidopsis thaliana] gb\|AAR24685.1\| At4g32960 [Arabidopsis thaliana] gb\|AEE86152.1\| uncharacterized protein [Arabidop	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	uncharacterized protein	-	-	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA62

Fln msg: your sequence is shorter than subject: 248 - 273

Fln protein: HSFEDIIFCIDIDRQMEAEMKVAGAKGQPLTRIDSIKQAILLFVHSKLAINPQHRFAFATLGHSATWCQKEFTNDIESISATVRGLAADSLYIHSDLTQLFRMAVAEAKKSRSQSRTLRVILIYCRSSVVPEYPAHWPESQKLFDLDVIYLHDKPNRDNCPQKVYDALVDALERTTEHEGYIYENGGGLTRVLFRHMCILLSHPQQRCPQDDIDIPKSLIKIVPPGDAPASSSSSRKEEESSITSYQ*

Protein Length: 249

Fln nts: GACACTCATTCGAAGACATCATATTTTGCATAGACATTGATCGACAAATGGAGGCCGAGATGAAAGTTGCAGGAGCCAAAGGTCAACCTCTCACTCGCATAGATTCGATCAAGCAAGCGATCCTCCTCTTCGTTCATTCCAAGTTAGCAATCAACCCCCAACACAGATTTGCCTTTGCAACATTGGGTCACTCTGCAACATGGTGCCAGAAGGAATTCACCAACGACATAGAGAGCATAAGTGCAACAGTGAGAGGTTTGGCGGCAGATTCCCTGTACATACACTCTGACCTCACTCAGCTCTTTAGAATGGCTGTTGCCGAGGCTAAGAAGTCCCGTTCTCAGTCTAGAACTCTGAGAGTGATTCTTATCTACTGCAGATCTTCTGTAGTGCCTGAATACCCAGCTCACTGGCCCGAAAGTCAGAAGCTCTTTGATTTGGATGTTATATATCTTCATGATAAACCAAACCGAGACAACTGTCCACAGAAAGTTTACGATGCTCTTGTTGATGCTTTAGAGCGTACTACTGAACATGAGGGCTATATTTATGAGAATGGTGGAGGTCTTACACGTGTACTTTTCCGGCATATGTGCATTCTGTTGTCTCATCCCCAACAGCGTTGTCCTCAAGATGACATTGATATTCCGAAGTCTCTGATAAAAATCGTTCCTCCAGGTGATGCACCTGCGAGCAGTTCATCATCACGCAAAGAAGAAGAGAGTAGTATTACGTCTTACCAGTAG___CAAAGGATCAGTACTCCTTTTGGTGTAAATTATATGATACTTGTCTAGCTCAATGTATATGGTTGACAGGTGTGTTCTATTTATATCAAGGATTTTGATATTGAAGATGTCTAGCTCTTCTGGTTAAACTTAGTGCAAATATGCATATTTTAATTTTCTATTTGAGGTCCGATGTTGATATC

Fln Alignment:

Contig2591___HSFEDIIFCIDIDRQMEAEMKVAGAKGQPLTRIDSIKQAILLFVHSKLAINPQHRFAFATLGHSATWCQKEFTNDIESISATVRGLAADSLYIHSDLTQLFRMAVAEAKKSRSQSRTLRVILIYCRSSVVPEYPAHWPESQKLFDLDVIYLHDKPNRDNCPQKVYDALVDALERTTEHEGYIYENGGGLTRVLFRHMCILLSHPQQRCPQDDIDIPKSLIKIVPPGDAPA
D5AA62_________________HSFEDIIFCIDIDRQMEAEMKVAGAKGQPLTRIDSIKQAILLFVHSKLAINPQHRFAFATLGHSATWCQKEFTNDIESISATVRGLAADSLYIHSDLSQLFRMAAAEAKKSRSQSRTLRVILIYCRSSVVPEYPSHWPESQKLFDLDVMYLHDKPNRDNCPQKVYDALVDALERTTEHEGYIYENGGGLTRVLFRHMCILLSHPQQRCPQDDIDIPKSLIKIVPPGDAPA

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
254		50	16	33	1.0
263		66		33	1.0
402	80	20			0.995493
403		20	80		0.995493
404		20		80	0.995493
406			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain