SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2588

Length: 393 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene2588
ATGGGGAATCTCGCTCATTTCATTGGGCACCTTAAAGTCACAGACAGAAATAAAAGATCTCATATGAAATTAGACACAATAATATGTATGGTATGAGCATGTGAAAATTTTAAACTCGGATGTTGCCGACTGGCGATGTACAATTCCTATCCTGAGACTACCGGGAAAAGCTCCATCACACTGAGAGGTTCAAGTGGGCTTATCAGAAGAGGCGTGGATGGCCACGATCACGATCACTTCCTGCGAGATGAACTACCTGGTTTTTCGTTACCTCCATGAATCAGGGTTTATCCATGCTGCATTTACATTAGGGTATGAAGCTGGCATCCATAAAAATCCCATAGATGGTAATCTAGTACCTCCTGGTGCCCTTGTGTCTTTTGTTCAGAAAGG

Ace file of the UniGene biog2_v2.0_unigene2588 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17531	6/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MIP-T3 multi-domain protein	-	-	8.0e-16	29%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	79%
Blast2go	f-box-like wd repeat-containing protein tbl1xr1-like	-	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	86%
Blast2go	histone deacetylation	GO:0016575	Biological Process	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	SART-1 protein	IPR005011	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F6HSW7

Fln msg: Distance to subject end: 540 aas, your sequence is shorter than subject: 58 - 597

Fln protein: MATITITSCEMNYLVFRYLHESGFIHAAFTLGYEAGIHKNPIDGNLVPPGALVSFVQK

Protein Length: 59

Fln nts: ATGGGGAATCTCGCTCATTTCATTGGGCACCTTAAAGTCACAGACAGAAATAAAAGATCTCATATGAAATTAGACACAATAATATGTATGGTATGAGCATGTGAAAATTTTAAACTCGGATGTTGCCGACTGGCGATGTACAATTCCTATCCTGAGACTACCGGGAAAAGCTCCATCACACTGAGAGGTTCAAGTGGGCTTATCAGAAGAGGCGTGG_-_ATGGCCACGATCACGATCACTTCCTGCGAGATGAACTACCTGGTTTTTCGTTACCTCCATGAATCAGGGTTTATCCATGCTGCATTTACATTAGGGTATGAAGCTGGCATCCATAAAAATCCCATAGATGGTAATCTAGTACCTCCTGGTGCCCTTGTGTCTTTTGTTCAGAAAGG

Fln Alignment:

Contig2588___TITSCEMNYLVFRYLHESGFIHAAFTLGYEAGIHKNPIDGNLVPPGALVSFVQK
F6HSW7_________________SITSAELNYLVFRYLHESGFTHSAFSLGYEAGINKCPIDGNMVPPGALITFVQK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
212	28	71			1.0
218	28		71		1.0
221	28		71		1.0
229		28		71	1.0
231		71	28		1.0
234			71	28	1.0
238			28	71	1.0
257		71		28	1.0
272	50	50			1.0
274	83	16			0.994512
292		20		80	0.995493
297		40		60	1.0
309	60			40	1.0
334			40	60	1.0
349		75	25		0.996473
368		33	66		0.997452
370		66		33	0.997452
371	33	66			0.997452
372	33	66			0.997452
373	66	33			0.997452
374	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain