SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2585

Length: 823 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2585 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19524	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Sterol delta-7 reductase DWF5 n=1 Tax=Gossypium hirsutum RepID=Q2QCX7_GOSHI	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	7-dehydrocholesterol reductase	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	brassinosteroid biosynthetic process	GO:0016132	Biological Process	87%
Blast2go	sterol delta7 reductase activity	GO:0009918	Molecular Function	87%
Blast2go	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ergosterol biosynthesis ERG4/ERG24	IPR001171	-	0.0	-
Sma3	Sterol reductase, conserved site	IPR018083	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	C %	G %	T %	Probability
418	14		85	0.993533
420	14	85		0.993533
452	20		80	0.995493
673	33		66	0.997452
737	33	66		0.997452
741		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain