SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2536

Length: 1015 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2536 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25516	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	Squamosa promoter-binding protein, putative n=1 Tax=Ricinus communis RepID=B9RZZ7_RICCO	-	-	41%
FL-Next	sp=Squamosa promoter-binding-like protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	43%
Blast2go	squamosa promoter-binding-like protein 1-like	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Transcription factor, SBP-box	IPR004333	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SMX9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 286 - 881

Fln protein: RKLLNIFSVAM*MVLIGRPSPC*LKLVFYI*LCAEIAGKWLSSIDLCTRVCGRGDNVDSWTRTGRT***WLCFKPDMPGPAGLTPLHIAASMENAEGVLDALTNDPGQIGVKAWTIVRDKTGMTPEDYALLRGHRFYIELVHGKFVKNVMPEHVSLDIPEPLSQEQSIIKMSVSAPRSTSQAEKIGEGNIQGNKADTEFCQKIRWPGGLRSDQGKIKSLPSHCKLCDQQKLRKYRSRTLIYRPAMLSMMAIATVCVCVTLLLKGPPEVHFVTAPFRWEVVKFGFM*

Protein Length: 287

Fln nts: GCGGAAACTTCTGAACATCTTTTCAGTAGCAATGTAAATGGTGCTAATTGGTCGGCCATCACCATGTTGATTGAAGTTGGTATTCTACATATAGCTGTGCGCAGAAATTGCAGGGAAATGGTTGAGTTCTATTGACTTATGTACCAGAGTCTGTGGCAGAGGAGACAATGTTGACAGCTGGACAAGGACAGGCAGAACTTAGTAGTAATGGCTTTGTTTCAAGCCTGACATGCCTGGACCTGCAGGCCTTACACCTCTTCATATTGCAGCTAGTATGGAGAATGCAGAAGGTGTGCTGGATGCACTCACCAATGATCCTGGCCAGATTGGAGTAAAAGCATGGACCATTGTTCGTGATAAAACTGGCATGACTCCTGAAGACTATGCGTTGCTCAGAGGACACCGTTTTTACATTGAACTGGTTCATGGAAAATTTGTAAAAAATGTGATGCCTGAACATGTTAGCCTTGACATTCCTGAGCCTTTGTCCCAGGAACAGAGCATCATAAAAATGTCAGTTTCTGCACCGCGTTCAACTTCACAGGCAGAGAAAATAGGTGAAGGTAACATACAAGGGAATAAAGCTGACACAGAGTTCTGTCAGAAGATTAGATGGCCTGGTGGTCTCCGCTCAGACCAAGGTAAGATAAAGTCTTTGCCATCTCATTGCAAACTCTGTGACCAGCAAAAACTAAGAAAATACAGATCAAGAACCCTTATATACAGGCCTGCAATGCTTTCTATGATGGCTATTGCAACTGTCTGTGTTTGTGTGACCCTTCTTCTGAAGGGACCACCAGAAGTTCACTTTGTGACGGCTCCTTTCAGGTGGGAAGTGGTAAAATTTGGATTCATGTAA___AGTCTATTTTCAGAGTCAATGTAGTCAAGGCTGTTTCTGCAGTTTTATCAATAACTGAGCAACAGGGCTAGGGCTGTGGCTACTAACCAACTTTCTGCCAATTGCAGAGTATAGCGTAATCTTTTAATTGTTAGGTATTGTTTTCTTCTATGGTTT

Fln Alignment:

Contig2536___FKPDMPGPAGLTPLHIAASMENAEGVLDALTNDPGQIGVKAWTIVRDKTGMTPEDYALLRGHRFYIELVHGKF-VKNVMPEHVSLDIPEPLSQEQSIIKMSVSAPRSTSQAEKIGEGNIQGNKADTEFCQKIRWPGGLRSDQGKIKSLPSHCKLCDQQKLRKYRSRTLIYRPAMLSMMAIATVCVCVTLLLKGPPEVHFVTAPFRWEVV
Q9SMX9_________________FRPDAAGPAGLTPLHIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQ------KEPKSGPMASAL-----------------------------EITQIP--CKLCDHKLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWELL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
356		20	80		0.995493
357		20	80		0.995493
360	80			20	0.995493
402	75		25		0.996473
482		33		66	0.997452
511		33		66	0.997452
512		33	66		0.997452
517		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain