SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2524

Length: 1214 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2524

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3845	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	nuclear pore complex protein Nup53 [Arabidopsis thaliana] gb\|AAB63646.1\| unknown protein [Arabidopsis thaliana] dbj\|BAB01270.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAM64501.1\| unknown [Arabidopsis thaliana] gb\|AAN86172.1\| unknown protein [Ar	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	nucleoporin nup53	-	-	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	MPPN	IPR007846	-	0.0	-
Sma3	Nucleoporin, NUP53	IPR017389	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPN2

Fln msg:

Fln protein: MSSRVQRSSRKGVYHSQFYRDLSSPVKLDFAAQTQPSSSYSSPWRHTFDGPDPPPPPILSLEERHDFPADGPPPDHEFKSPVRTSSPSSPTIFVHFKSTTPVAQGEAAPSNFQTPGSSKWRSPPLWDGGEKQQEKSPVLRDGQQRQERGLFTLSPNPDTVRPENQANGDTNDQNWVVVYGFTPADTNLVLREFEKCGTILKHVPGPCGSNWMHIWYQNTYDVKKALQKNGMQISATVMVGVKPLDPLQRHALTEKAKVGGFMVLPPRSPGKVTASTSSMKASSRPYYLQQPNEGGQHFSGAIASPSRSTISRIVDLIFGI*

Protein Length: 322

Fln nts: ATGGGGATCTAAAACGGGGAGTGGTTCCGATCTGCCAAACTTGGAGCGAGG_-_ATGAGCAGCAGAGTCCAGAGAAGCTCCCGCAAAGGAGTGTATCATTCACAATTCTACAGAGACCTCTCCTCTCCTGTGAAACTCGATTTCGCAGCCCAAACTCAGCCATCCTCCTCCTATTCATCTCCATGGCGTCACACCTTCGACGGACCCGATCCTCCTCCACCTCCCATACTTTCTCTCGAAGAACGCCACGATTTCCCAGCCGACGGGCCGCCTCCGGATCACGAGTTCAAAAGTCCGGTCCGAACCTCATCACCCTCCTCCCCCACGATATTCGTTCATTTCAAATCCACTACCCCCGTTGCGCAAGGGGAGGCAGCACCGTCAAACTTTCAGACTCCCGGGAGTTCGAAGTGGAGATCTCCTCCTCTATGGGACGGTGGAGAGAAGCAGCAGGAAAAGTCCCCTGTGTTGCGTGATGGGCAGCAGCGGCAGGAGCGTGGTTTATTTACGCTTTCTCCTAATCCAGATACTGTGCGGCCTGAAAACCAGGCGAACGGAGATACGAATGACCAAAACTGGGTCGTCGTTTATGGATTTACGCCAGCGGACACAAATTTGGTGCTGCGTGAGTTTGAAAAGTGTGGCACAATTTTGAAACATGTACCAGGGCCATGTGGGTCAAATTGGATGCATATTTGGTATCAGAACACTTATGATGTAAAGAAAGCTCTTCAAAAGAATGGGATGCAGATTAGTGCAACAGTGATGGTAGGGGTGAAGCCATTGGATCCTCTTCAGCGCCATGCTTTAACTGAAAAGGCTAAGGTAGGAGGCTTCATGGTATTGCCACCTCGGTCACCTGGGAAGGTTACAGCATCAACATCATCCATGAAGGCATCATCACGACCTTACTATTTACAACAACCAAATGAGGGAGGCCAACATTTCTCAGGGGCCATTGCTTCTCCATCTAGATCAACCATATCAAGAATAGTTGATCTTATATTTGGCATTTGA___TGTACTCTATGCTAGTATAATTAGGACTTGATGTGGAATATGCTAGGCTTGATTTCTATTCTTTATTTTCATTGCTTACACTGAATAAAGACATCCAGAGTTGGCTATTTCACAGCATGTCCACAAAGTGTCAGGCTCTTGCAGAGTTACTGCTAGATTTGCACTTGTTATGGAGTATAGAGTGATTGCAAGGTCACTGC

Fln Alignment:

Contig2524___MSSRVQRSSRKGVYHSQFYRDLSSPVKLDFAAQTQPSSSYSSPWRHTFDGXXXXXXXILSLEERHDFPADGPPPDHEFKSPVRXXXXXXXX-IFVHFKSTTPVAQGEAAPSNFQTPGSSKWRSPPLWDGGEKQQEKSPVLRDGQQRQERGLFTLSPNPDTVRPENQANGDTNDQNWVVVYGFTPADTNLVLREFEKCGTILKHVPGPCGSNWMHIWYQNTYDVKKALQKNGMQISATVMVGVKPLDPLQRHALTEKAKVGGFMVLPPRSPGKVTASTSSMKASSRPYYLQQPNEGGQHFSGAIASPSRSTISRIVDLIFGI
B8LPN2_________________MSSRVQRSSRRGVYHSQFYRDLSSPLKLDFSAQSQPSS-YSSPWRHTFDGPDPPPPPILSLEERLDFPPDGPPPDQEFKTPLRTSSPSSSPTFFVHFNSSTPIAQGETAPSNFQTPGSSKWRSPPLWDGGEKQQEKSLELRDGQQRQERGIFTLSPPGENVRPENQANGDADDQHWLIVYGFTPADTNLVLREFEKCGTILKHVPGPCGSNWMHILYQNTYDVKKALQKNGMQISAAVMVGVKPLDPLQRHVLTEKAKVGGFMVLPPRSPGKVAASTSSMKASSRPYYLQQPNEGGQHFSGAIASPSRSTISRIVDLIFGI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
456	75		25		0.996473
554		66		33	0.997452
765	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain