SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2515

Length: 1440 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2515

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7883	24/25

Source	Descriptions	Term	Type	Identity
AutoFact	Per1-like family protein [Solanum tuberosum]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	per1-like family protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	endomembrane system	GO:0012505	Cellular Component	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Per1-like	IPR007217	-	-
Sma3		IPR017909	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5BYH9

Fln msg:

Fln protein: MADRDLPGSMVLVLVLLLSSVVASYASAGDADPLYRSCVENCEKTGCVEKTCFKYCKLPVNGASVEGAWFMQEPLYLRWKEWDCKSDCRYHCMVKREADRESLGQKPVKYHGKWPFKRVFGFQEPVSVAFSVFNLSLQFHGWLSFLILVYYKLPLRPQSRSTYYDFTGLWNIYGILSMNAWFWSAFFHSRDVELTEKLDYSSAVALVGYSLIVAILRTLNVRDEAARVMVAAPLIAFVTTHILYLNFYELDYGLNMKVCVVMGVTQLLLWAIWAGVTSHPARYKVWIVVFGGGLAMLLEIYDFPPIWGYVDAHAVWHATTVPLTYLWWSFIKEDALSRTEKLVTRSKDKIEPKKAQ*

Protein Length: 358

Fln nts: ATGGGGGCTACTGAGGTGGTCAATGGGGATAAAACGGAAGTCGGTGGACACAAGAAAGAACGTTTCTTTGGTCTATCTCTGAACCGTTTGACTGTTCGCATCTCCAAATTCACGATTTGGAAATTTGGTTTTCAATGCCATGATTTTGAGGCCGAAATCAACTGGATTCCGACAATGGAAGCCTAGGGTTTGAAGTTTAACGGCTTACATAGTCTATTTTATTTTGTAGGCAGTGGGAGATTTGAAAGCATTAGCG_-_ATGGCAGATCGGGACTTGCCAGGTTCGATGGTTCTCGTGCTGGTACTCCTCCTCAGCTCGGTGGTGGCTTCCTACGCAAGCGCTGGCGATGCCGATCCTCTTTACAGGTCATGTGTAGAGAATTGCGAGAAAACTGGCTGTGTCGAAAAAACTTGTTTCAAGTATTGCAAACTGCCTGTAAACGGTGCTTCTGTGGAAGGTGCCTGGTTTATGCAAGAACCTCTGTACTTGCGTTGGAAAGAATGGGACTGTAAGAGCGACTGTCGCTACCACTGTATGGTTAAAAGGGAGGCAGACAGGGAGAGTCTGGGACAGAAGCCTGTAAAATATCATGGAAAATGGCCTTTCAAGCGAGTTTTTGGCTTCCAGGAGCCAGTGTCAGTGGCATTCTCTGTCTTTAATCTTTCCTTGCAGTTCCATGGATGGCTCTCATTCTTAATTCTTGTATATTACAAGCTACCATTGAGACCTCAAAGCAGAAGTACATACTATGACTTTACTGGCTTGTGGAATATATATGGCATTTTATCCATGAATGCATGGTTTTGGAGTGCCTTCTTTCACAGCAGGGATGTGGAGTTAACAGAAAAACTTGATTATTCATCAGCGGTGGCACTAGTGGGCTACTCACTAATTGTGGCCATCCTTCGGACCTTAAATGTTAGGGATGAGGCTGCTCGAGTTATGGTGGCTGCCCCATTGATAGCATTTGTGACCACTCACATCTTGTACCTTAACTTCTATGAACTCGATTATGGATTGAACATGAAAGTATGTGTTGTAATGGGGGTGACGCAGCTTCTGTTGTGGGCAATCTGGGCTGGTGTCACTTCCCATCCGGCACGATACAAGGTATGGATAGTAGTTTTCGGGGGAGGGCTGGCCATGCTTCTCGAGATTTATGACTTTCCCCCAATCTGGGGATATGTGGATGCTCATGCTGTATGGCATGCAACAACTGTCCCTCTGACATACCTTTGGTGGAGTTTCATCAAAGAGGATGCTTTGTCAAGAACTGAAAAGCTCGTGACTAGATCCAAAGATAAGATTGAACCCAAGAAAGCACAATAA___CATTATTTCTTATGCAGATGGACACTTCAGTGGAAGAGAAATCCCTTTTAGAAAGACTGCGTTGTGAAGGATATTTTTTACCAGTTTTTCATGTATGTTGTTCGTTTCTGTTC

Fln Alignment:

Contig2515___GDADPLYRSCVENCEKTGCVEKTCFKYCKLPVNGASVEGAWFMQEPLYLRWKEWDCKSDCRYHCMVKREADRESLGQKPVKYHGKWPFKRVFGFQEPVSVAFSVFNLSLQFHGWLSFLILVYYKLPLRPQSRSTYYDFTGLWNIYGILSMNAWFWSAFFHSRDVELTEKLDYSSAVALVGYSLIVAILRTLNVRDEAARVMVAAPLIAFVTTHILYLNFYELDYGLNMKVCVVMGVTQLLLWAIWAGVTSHPARYKVWIVVFGGGLAMLLEIYDFPPIWGYVDAHAVWHATTVPLTYLWWSFIKEDALSRTEKLVTRSK
A5BYH9_________________GDSDPLYKACIEQCEKTGCVGDKCFQHCKLSSDGNPIGGPWYLQEPLYLRWKQWDCRSDCRYHCMLAREEEREELGDKPVKYHGKWPFRRVYGIQEPVSVALATLNLAMQFHGWVSFLILLYYKLPLRPDKK-TFYEYTGLWHIYGILAMNAWFWNAVFHSRDVDLTEKLDYSSGVALLGFTLILAILRAFNVRDEAARVMIAAPLMAFVTTHILYLNFYKLDYGLNMKVCLTMGIAQLLLWTVWAGVTHHPSRWKLWVVVVGGALAMFLEIYDFPPYWGFVDAHAVWHALAIPFTYLWWSFVKDDSEFRTSALMKKVK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
451		25		75	0.996473
550	25	75			0.996473
620		25	75		0.996473
622	25			75	0.996473
624		75	25		0.996473
653		20		80	0.995493
726	60		40		1.0
936		16		83	0.994512
965	16	83			0.994512
967	16			83	0.994512
998			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain