SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2513

Length: 1706 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2513

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27833	23/33
SustainPine v2.0	sp_v2.0_unigene60967	10/33

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N9 [Arabidopsis thaliana] dbj\|BAC42409.1\| unknown protein [Arabidopsis thaliana] gb\|AAP86669.1\| 26S proteasome subunit RPN9b [Arabidopsis thaliana] gb\|AEE84124.1\| 26S proteasome regulatory subunit N9 [Arabidopsis thaliana	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	26s proteasome regulatory subunit n9	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADZ2

Fln msg:

Fln protein: MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDATVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLVAS*

Protein Length: 102

Fln nts: ATGGGGGGTGTAAGGCTTATGGCGAGATCGAAGGCAGGTACTAACAGTTAGTTAATTTTCAGAGGAACGGGCCGCGAAGGGGTTAGAGAATTCACATCCCGGCATTCTGCGTTTGTTCAAGGCTTTTCTTTGCGGATCTACGTTTGTAAAATGGCCGCTCTCAAGTATCTGGAAACGCAGAGGGCAGCCCAGCCCGAACTGGCCGAATGGTACAATGCATTGGCTGATCTCTACGAGCGCAAGCTGTGGCACCAACTCACTCTCAAGCTCGAACAGTTCGTAGCCCTCGCAGTTTTTCAGGCTGGTGATGCGCTTATCCAACTATATCACAATTTTATAACAGATTTTGAGACGAAGATCAATCTGCTTAAGCTTGCACATTTTGCTGTTATTGTTTCTCGTCAGTACACAGAAAGGGAAGCTGCTATCAGCTACTTAGAGGGAGTAATCGAGAAGCTTCGTGCCACAAGGGATACACGAATTGAGGAACCAATACTATATGTTAGAATGCAAATAGCTGCATTAAAACTTGAACAAAGTGAACAGAAAGAATGTAAAAAGCTACTAGATGAGGGCAAACATACACTGGACAGTATGACTGATATAGATCCTTCTGTTTATGCAAGCTACCATTGGGTCTCATCTCAGTATCATAAGTCGAGACAAGAATTTGCTGAGTTTTATAAAAGTGCTCTTCTGTTTCTGGCTTATACTACTGTAGAGTCTCTTTCAGAACCGTTCAAGCTGGATTTAGCATTTGACTTGTCTCTTGCTGCATTACTTGGAGATAACATATACAACTTTGGAGAACTGTTGGCACATCCAATTGTGAAGAGTCTTCTGGGTACGAGTGTAGAGTGGCTATATTATATTTTACAAGCATTTAATGCTGGTGACTTAGCTCGGTATCAAGAACTATGTCATGTTCATAGGGATGCTCTCAATGCACAACCGGCGCTTGTAGAGAATGAGAAAAGTTGCTGGAAAAGATTAATATCCTATGCTTG_-_ATGGAGATCATATTTAGCCGTCCTTCAGAAGATAGAACAGTCCCACTGAGTATCATTGCAGACCGAACCAAATTATCAATTGAAGATGTTGAGTATCTCCTCATGAAAAGCCTTTCTGTTCATTTAATTGAAGGGGTTATTGACCAAGTTGATGCGACTGTGCATGTATCTTGGGTACAGCCTAGAGTGCTGGGAATACCCCAGATCAAATCCTTAAGGGATAAGCTTGACAATTGGCTGCAAAAAGTCCACACAACTCTGTTGGCTGTTGAAGCTGAAACCCCAGATTTAGTGGCATCATGA___TTGAAAAGTAAAGCGTAGACGAAGGCATCAAATGAAAGCATGGCCATTTTAAGTTGTTGACAATTGTCAATGAGTCTTCCATGGAGATGCGATAATTTAACCCCATCTTTTCAGCCGTCTGCATTATTGTTGTTAGCTTTTCAAAGATAGTAATTTGTGCCTTTCTTTGAGGTCAGAGAATTCATGCAGCAATTTGTCCTAACAGAGCATTTGTTTTCAGCACTGTCAAAGAAAGACTCAGTTTGCTGATTTTTGTAGGGATCGAATCTGTAACTTTGCTGGCCATGAATATTTCACTGAGATCAGTATAGTCCATCTTTTGTGTGTTTGAATTTCAATTTGATAAGAGATGTAATATTTGGGAACGAATATTATTCTGTAGCTGCTAATAATTCC

Fln Alignment:

Contig2513___MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDATVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLV
D5ADZ2_________________MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDGTVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1350	90			10	0.90298
1351	90		10		0.90298
1353		90	10		0.90298
1383	88		11		0.923564
1568			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain