SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2482

Length: 1269 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2482

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11271	19/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	IBR domain containing protein	-	-	7.0e-07	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	probable e3 ubiquitin-protein ligase rnf144a-like	-	-	0.0	57%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACW0

Fln msg: atg_distance in limit (1-15): atg_distance = 9, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 307 - 343

Fln protein: MAFAWLPVPEYQSMTCSSSNSDTISSITPPENDDPTQNSVGKRLRSGRILFPLPKRPRRTGKRVVKGNQDAPSMKESCRICFEAKYPSEFFDRMACSHRFCSSCMALHIRGKLQENSLPIHCPEPSCSENLIPQICEAILSKLTIEKWKLALTDVENPISQRSCCPFEDCSAPLLKDVPEAGSSTAAAAVVIKKSECPNCARLICVQCGVPWHEGFDCTEIKKVSSREEEKGDTALFKLAKEKDWQQCPRCKHIVEKTSGCRHICADVVVSFVMCADRNGRGMEHLAVALGRQNEKGSTDFHGFQI*

Protein Length: 308

Fln nts: ATTCTTTACGATTTCGAGCTTTAGGTGCCGAAAGAATATATATGATGGGGATGCAAGAGAAGAAAACGGGTTCAACATCAGTTGAAAAGTAGATTGAAGCATCTCTGCAACTGCAGCTGGAGCAAGCA_-_ATGGCATTCGCATGGCTACCGGTACCTGAATATCAATCGATGACTTGCTCTTCATCAAATTCAGATACAATTTCTTCGATTACTCCACCAGAAAACGACGATCCCACACAGAATTCAGTGGGTAAGCGCCTGAGAAGCGGACGCATATTGTTTCCCTTGCCCAAAAGGCCTAGAAGGACTGGGAAGAGGGTGGTGAAAGGAAATCAAGATGCCCCTTCTATGAAAGAATCGTGCCGCATCTGTTTTGAAGCGAAATACCCATCTGAATTTTTTGATAGAATGGCTTGTTCGCACAGGTTTTGTTCTTCTTGCATGGCCCTGCATATCCGTGGTAAATTGCAAGAAAATTCGCTGCCCATTCATTGCCCAGAACCCAGTTGCAGTGAGAATCTGATTCCTCAAATATGTGAAGCGATCCTTTCGAAGCTTACCATTGAGAAGTGGAAATTGGCATTGACGGATGTGGAGAATCCCATTTCTCAGAGGTCCTGTTGCCCTTTTGAGGATTGCTCGGCACCCTTGTTGAAGGATGTGCCTGAAGCAGGAAGCTCAACTGCGGCAGCTGCTGTGGTTATTAAAAAGTCAGAATGCCCCAATTGCGCAAGGTTAATTTGCGTTCAGTGCGGTGTGCCATGGCATGAGGGTTTTGATTGCACTGAAATAAAGAAGGTGTCTTCTCGCGAGGAAGAGAAAGGTGACACGGCACTCTTCAAGCTAGCCAAAGAGAAAGACTGGCAACAGTGTCCAAGATGCAAACATATTGTCGAAAAAACGTCTGGATGCCGTCATATTTGTGCAGATGTTGTTGTGAGTTTTGTTATGTGTGCGGATCGGAATGGACGAGGGATGGAGCACCTTGCGGTTGCCCTGGGTAGGCAGAATGAAAAAGGAAGCACAGATTTTCATGGATTCCAGATCTAGTACAAAGCCCTGTTTTAGTAACACTGCTTCGAGAAATACTAAATAGGGTTTACTAAATTCTATTGTAATTTATCTCTTTGCTAATATATCTATGTTTCTCTTAGGAGAACAAGTGATAGATAAATAGGGAGAATTCTCTATTTTGCAGGTTGTTGATCCCAGTCAGTTAATGTGCAATTTTTTTTAGAACATGCATTGTAATGTCGAATTCAAGTATGTT

Fln Alignment:

Contig2482___PKRPRRTGKRVVKGNQDAPSMKESCRICFEAKYPSEFFDRMACSHRFCSSCMALHIRGKLQENSLPIHCPEPSCSENLIPQICEAILSKLTIEKWKLALTDVENPISQRSCCPFEDCSAPLLKD-VP-EAGSSTAAAAVVIKKSECPNCARLICVQCGVPWHEGFDCTEIKKVSSREEEKGDTALFKLAKEKDWQQCPRCKHIVEKTSGCRHI
D5ACW0_________________PNNASRIGKEGVEGNEDSLLMKQLCRICLEDKYPSEIFDNMVCSHRFCCTCITLHIRTKLQENLVSIDCPEPDCSEHLTPEQCVVILPKQTFEDWSLALVEASIPPSQKFYCPFQDCSATLVKDTVPDEVGCSNGEAAVVTKESKCPECRRLFCAQCAVPWHGGLDCSELQRLSDSEREEFDLMLFKLAKENEWQRCASCKHMIERNSGCCHM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain