SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2476

Length: 1362 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2476

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1577	17/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein [Arabidopsis thaliana] emb\|CAB38305.1\| ribosomal-like protein [Arabidopsis thaliana] emb\|CAB80431.1\| ribosomal-like protein [Arabidopsis thaliana] gb\|AAL67122.1\| AT4g37660/F19F18_150 [Arabi	-	-	7.0e-32	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	50s ribosomal protein l7 l12-like	-	-	1.4013e-45	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	translation	GO:0006412	Biological Process	1.4013e-45	74%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	1.4013e-45	74%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	1.4013e-45	74%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.4013e-45	74%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Ribosomal protein L7/L12, C-terminal	IPR013823	-	-
Sma3	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	IPR014719	-	-
Sma3	Ribosomal protein L7/L12, chloroplast	IPR015608	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQH6

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 103 - 199

Fln protein: MNRYASPVAGMAMPGAPAGTGPAAVEKKVAEKTSFDVKLEKYDATAKIKIIKEVRSFTDLGLKEAKDLVEKAPAILKKGLTKEEATRMIEKLKELGATAVME*

Protein Length: 104

Fln nts: GACAGATTCAGGTGTGCGAGCAATGTGCGGGTGAGAAACCAAATTTCTTGTTTCTCCCTTCTGTTTCATAATCTCAAGTGATGAAGGGGAGCTCCCTCTCTTCCTGCTGTGAGCATCTAAGCGTTCCTCCTCTAGAAGAGCCCTGGAATGAAAGCCTGTATCGTTGGGATTGTTTCAGTGCCACCACGGTAACTAACTAAATAAAAGGTTCAAAATATGTTCAGAGAAGCAAGTGCTAGGGCATATCAGCGATAAATAGAAGTACGAGACAAGCTGGCAGCCCAATAGAAGTACGAGTAAATTCTCAGAAAAATTCAGCCAGTGAGCACATAAAAGGCCGTCAAATCTGCATTCTTGGTTGTTTTTGGCTGCATTCCTTGGTGTCGGAAGTATCTCTGAGTCGGATTTGTCCAGGTAATCGGATGTCTTTTTCTCAGTGCAGTTCGTTACAGAGATAGTTTAAAAATTTAAATAGAACAACTGTTGGAATAAACGTTTAAGGATTCGGAAGAATTAAGATAAACATGTACAGCAACGCACTGTTAAGCAACTTTGAAAGCCGGTTGAATTACAGGGCATTAAGTATTTTGCCTGTGGCTCTTCATGAAGGCTTTTGTCGCCGATTCTCGTCTACATCCGCCAAAGGTAATTTACAGAACCAAGTGGAGAGTGGCAGTAAGCCGAAGCTGGAAAGAATTGCAGATGAGCTTCTTAGTTTAACTAAACTGGAGAGACATGATTTTCTATTTTGTTTAAACTGAAATTAGGG_-_ATGAATAGATACGCTTCTCCGGTGGCAGGCATGGCTATGCCTGGAGCTCCGGCTGGAACCGGTCCCGCTGCGGTAGAGAAGAAAGTTGCTGAGAAGACATCATTTGACGTCAAGCTTGAGAAATACGATGCCACTGCAAAGATTAAAATTATAAAAGAGGTGAGGAGTTTCACAGATCTAGGGCTCAAAGAGGCCAAAGATTTGGTAGAAAAGGCTCCTGCTATTTTGAAGAAAGGACTGACGAAAGAGGAGGCTACCCGGATGATCGAAAAGTTGAAGGAGTTAGGAGCTACTGCAGTGATGGAATGAGAGAGTCATTGTTCAGGAATTTGTTTTGTTGCTGGACAGATAATAGGGTAATTTATTGAGGGAATGTTGTTGAATATACTGGGTAGATTAGGGTTGTCTTTGGTGCCAGGGACCTGGATGAATCAGCCTTATTTTATAATAATTCCAGAGGATACGATTCTGTTTTACACAAAAGTTTTTGTTGTGGCTGTACTTTTCTGGGAAACTGGTGTTTTGCTAGGTAATGGTATCCAACCAAGCAAATTTTGCACAATAGGCCTTTTGATAGTGTACTCATCATTTCA

Fln Alignment:

Contig2476___VAEKTSFDVKLEKYDATAKIKIIKEVRSFTDLGLKEAKDLVEKAPAILKKGLTKEEATRMIEKLKELGA
A9NQH6_________________VEEKTEFDVVIDEVPSNARIAVIKVIRSLTSLALKEAKDLIEGLPKKFKEGAGKEEAEEAKKKLEEVGA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
769	33			66	0.997452
1185	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain