SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2474

Length: 1662 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2474 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15930	20/37
SustainPine v2.0	sp_v2.0_unigene32284	17/37

Source	Descriptions	Term	Type	Identity
AutoFact	Endoglucanase n=2 Tax=Pinaceae RepID=A6N838_PINTA	-	-	92%
FL-Next	tr=Endoglucanase; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	membrane-anchored endo- -beta-glucanase	-	-	90%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 9	IPR001701	-	-
Sma3	Six-hairpin glycosidase	IPR012341	-	-
Sma3	NADH:ubiquinone oxidoreductase, B12 subunit	IPR012576	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N838

Fln msg: your sequence is shorter than subject: 399 - 619

Fln protein: SSSPNDHYCWMRPEDVDYPRPVYDCHSCSDLAAETAAALAAACVVFKDNKLYSQKLVKGATTLFKFSREQRGRYSPSGSDASNFYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTLGIAKRAGAFRGGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTGGIDKNTMFSAVPPMFPTPPHHQPLGILEVDKVRAVVGEILRWLS*

Protein Length: 400

Fln nts: ATCTTCTAGTCCTAATGATCATTACTGTTGGATGAGGCCTGAAGATGTCGACTACCCACGCCCTGTATATGATTGCCATTCTTGTTCAGACTTGGCTGCGGAAACGGCTGCTGCCTTAGCTGCAGCATGTGTTGTTTTCAAGGATAACAAGCTTTACTCACAAAAACTTGTCAAGGGTGCTACAACGCTCTTCAAGTTCTCCAGGGAACAAAGAGGTCGATATAGTCCTAGTGGAAGTGATGCTTCCAATTTTTACAATTCTTCTGGCTACTATGATGAGTATGTTTGGGGAGGTGCCTGGATGTATTATGCCACAGGGAATAACTCTTATCTTCAACTGGCTACTACATTGGGAATTGCCAAGCGAGCTGGTGCATTCCGTGGTGGGCAGGACTATGGTGTTTTAAGCTGGGATAACAAACTAGCTGGTGCCCAAGTTCTCTTGAGCAGGCTGAGGCTTTTCTTAAGCCCTGGATATCCATATGAAGACGTTTTGCAGAGTTATCACAACCAGACTAATATTGTGATGTGCTCGTACCTTCCTGTCTTCCGTACCTTCAATAGAACAAGAGGAGGTTTGATTCAGCTGAACCATGGAAGGCCCCAACCTCTACAATATGTGGCAAATGCAGCTTTTCTTGCAGCAGTTTATAGTGATTATTTGACTGCTGCAGATATTCCTGGCTGGAACTGTGGCCCAAATTTTTTCAGTACGGAAACATTGCGTGACTTTGCACGAACTCAGATAAATTATATCCTAGGTAAAAATCCAATGAAGATGAGCTATGTTGTGGGATATGGAAGCCATTACCCCAAGCATGTACATCACCGTGGGGCATCCATCCCAAAGAACAAGATAAAGTACAGTTGCAAAGGAGGATGGAAGTGGCGTGACAGTCCAAGACCCAATCCCAATGTGATTGTGGGAGCCATGGTTGCTGGGCCTGATAAGCGTGATATGTTCCATGACGTTCGAACTAATTACAATTATACAGAGCCAACACTTGCAGGCAATGCTGGGTTGGTTGCGGCTTTGGTTTCCTTATCAGGGGGTGATACTGGGGGAATAGATAAGAATACAATGTTTTCTGCAGTTCCACCCATGTTCCCAACTCCCCCCCACCACCAGCCCCTTGGAATCCTTGAGGTTGATAAGGTTCGTGCAGTCGTAGGAGAAATTCTTAGATGGTTGAGCTAG___CTTTGATTAAAATGTTTTGTTATTTCAAGCTACATTGACGCAGATTCAAAAAGGTTCCCTACCAGCCCAGAGTTTTTATGAACGTTAGAAAGTCCTGATTACACCAATTATCATACCTGTTAGAGGGTTCAGTTGCGTGTGTTCGAACTCAACTATTTCCGAGATATCACATCACTTGTAAAATTCCTAATAAATTTGAATGCTTGAGGGTCAACAAACTCTCATCCCAGGAAAGTAGCCCCCCACAACTTGAAAATGTATCTTAATCCTAGTTGTTTTGCTAGCCATTTCATAAGGCTACTATTCCTAGTAAACATAGCCTAGATTTGAATTCTGTGTCAATGTTCGAGGTCTTTGCAGACTTATAATGCCATCGGTTTTCAGACATTGTATAGTGACCTATTTGATATTATTACAAATTCTTTCAACCATTTGATATTAATGTGAAGTTGAGATTTGATTAG

Fln Alignment:

Contig2474___SSSPNDHYCWMRPEDVDYPRPVYDCHSCSDXXXXXXXXXXXACVVFKDNKLYSQKLVKGATTLFKFSREQRGRYSPSGSDASNFYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTLGIAKRAGAFRGGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYVVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTXXXXXXXXXXXXXXXXGDTGGIDKNTMFSAV
A6N838_________________ASSPNDHYCWMRPEDVDYPRPVYDCHSCSDLAAETAAALAAASIVFKDNKLYSQKLVKGATTLFKFSREQRGRYSPSGSDVSKFYNSSGYYDEYVWGGAWMYYATGNNSYLQLATTMGIAKRAGAFRGGQDYGVLSWDNKLAGAQVLLSRLRLFLSPGYPYEDVLQSYHNQTNIVMCSYLPVFRTFNRTRGGLIQLNHGRPQPLQYVANAAFLAAVYSDYLTAADIPGWNCGPNFFSTETLRDFARTQINYILGKNPMKMSYLVGYGSHYPKHVHHRGASIPKNKIKYSCKGGWKWRDSPRPNPNVIVGAMVAGPDKRDMFHDVRTNYNYTEPTLAGNAGLVAALVSLSGGDTGGIDKNTMFSAV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
641		50		50	1.0
773	80		20		0.995493
798	20	80			0.995493
866	83	16			0.994512
867		16		83	0.994512
914	80		20		0.995493
938	80	20			0.995493
943	80			20	0.995493
1244		20		80	0.995493
1275		25		75	0.996473
1368			50	50	1.0
1435		83	16		0.994512
1535		50		50	1.0
1536	50	50			1.0
1537		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain