SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2430

Length: 363 nt

UniGene Fasta

>biog2_v2.0_unigene2430
ATGGGGCTTACCAAGCTACTGTCAAGATTGGTGGTCACATTTTCAAGGGAGTTCTATATGACCAAGGTTTGGACACCAGCATTGGGTCTTCTTCAAGTTTAGCTGATCATCAGTTGGGTGGGAGGAGCATGGCTTCCACCTCAGCTATGGTTGATCCTGCGCAAATGTATGGGGCTTCAAGCAGCGCTTTTATTGGAGGATGAACCTTTGGGATACATTTGTGCGATAGCAGCTTAAAAAGGTTTCTGAAGAAGCTCACCTGCATTGTACTGTTATCGTTCTGGACAATTGCTGGGCAATCATGGTTGAGGGTAACCCAAATAGAGATTTGACTGTCAACATGGGTAAGCTATTTCATGGATA

Ace file of the UniGene biog2_v2.0_unigene2430

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19518	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SY29_RICCO	-	-	1.0e-27	40%
FL-Next	tr=Transcription factor, putative; Ricinus communis (Castor bean).	-	-	0.0	47%
Blast2go	protein	-	-	8.71368e-32	56%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, lateral root primordium type 1	IPR006510	-	-
Sma3	Lateral Root Primordium type 1, C-terminal	IPR006511	-	-
Sma3	Protein of unknown function DUF702	IPR007818	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SY29

Fln msg: your sequence is shorter than subject: 67 - 344

Fln protein: GAYQATVKIGGHIFKGVLYDQGLDTSIGSSSSLADHQLGGRSMASTSAMVDPAQMYGASSSAFIGG*

Protein Length: 68

Fln nts: ATGGGGCTTACCAAGCTACTGTCAAGATTGGTGGTCACATTTTCAAGGGAGTTCTATATGACCAAGGTTTGGACACCAGCATTGGGTCTTCTTCAAGTTTAGCTGATCATCAGTTGGGTGGGAGGAGCATGGCTTCCACCTCAGCTATGGTTGATCCTGCGCAAATGTATGGGGCTTCAAGCAGCGCTTTTATTGGAGGATGA___ACCTTTGGGATACATTTGTGCGATAGCAGCTTAAAAAGGTTTCTGAAGAAGCTCACCTGCATTGTACTGTTATCGTTCTGGACAATTGCTGGGCAATCATGGTTGAGGGTAACCCAAATAGAGATTTGACTGTCAACATGGGTAAGCTATTTCATGGATA

Fln Alignment:

Contig2430___AYQATVKIGGHIFKGVLYDQGLDT----------SIGSSSSLADHQLGGRSMASTSAMVDPAQMYGASS-SAFIGG*TFG
B9SY29_________________AYQAVVKIGGHVFKGFLYDQGVETRDGFPNISELHLGGASSGGDG--GGRNGASSSPIIDPSDVYGAASGGGLLGGSAYG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
278	33		66		0.997452
348	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain