SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2394

Length: 784 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2394 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7675	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Pre-mRNA-processing factor 19 [Arabidopsis thaliana] sp\|Q94BR4.1\|PR19A_ARATH RecName: Full=Pre-mRNA-processing factor 19 homolog 1; AltName: Full=MOS4-associated complex protein 3A; Short=MAC protein 3A; AltName: Full=Plant U-box protein 59; AltName: Full	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	ubiquitin-protein pub59	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	86%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	86%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	Pre-mRNA-splicing factor 19	IPR013915	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	T %	Probability
528		10	90	0.90298
529	90	10		0.90298
633	25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain