SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2390

Length: 512 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene2390
CGGCATTGAGATTCCTCGGCCTTCTTACTGGTAGTTGGAGCCCTTATGCAGCATGCCTCATTTTGGACCCAATGTCAGTGCTGCAAGACCTTCCTTTCACTTTCTCTTCCATATTTCTTGATATCAGTTGGAGCTCTGTCCTTGTTTAGTTGTACAGAAATTGTTAAGTTAATAGATCGAATCTGCGACTGGCAAATATCTTTGCAAAAGGAGAATGCATAGATTCCATAGGTTACATTGACAGAGATAGAAAAGAAAGTTTGTAGCCTTCTTCTACATATTTTGCACCAGACATGTATTTCACTTAAAGATCATTTGTCATTTGATGTTCACTTTAAACTGGTAAATACTAATATTGTATAGTTATCATCCAAACTCGTGTTCTAAAATCCCTAATTAGTAACTTGAATTTGGATTTCATAGACAGACACTTGCAAATTTCCGTCAACCAGTTTCAAATGTTAAACAGAATTCGAGGGATGGAATAATGTACAATGCCTCACTGACCTTAG

Ace file of the UniGene biog2_v2.0_unigene2390 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12520	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WS01038.B21_K03 SS-R-N-A-11 Picea sitchensis cDNA clone WS01038_K03 3, mRNA sequence.	-	-	0.0	92%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	52%
Blast2go	protein resurrection1	-	-	2.09732e-26	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	cuticle hydrocarbon biosynthetic process	GO:0006723	Biological Process	2.09732e-26	65%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	2.09732e-26	65%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: B9GI52

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 72 aas, putative chimeric sequence, your sequence is shorter than subject: 49 - 1833

Fln protein: ALRFLGLLTGSWSPYAACLILDPMSVLQDLPFTFSSIFLDISWSSVLV*

Protein Length: 50

Fln nts: CGGCATTGAGATTCCTCGGCCTTCTTACTGGTAGTTGGAGCCCTTATGCAGCATGCCTCATTTTGGACCCAATGTCAGTGCTGCAAGACCTTCCTTTCACTTTCTCTTCCATATTTCTTGATATCAGTTGGAGCTCTGTCCTTGTTTAG___TTGTACAGAAATTGTTAAGTTAATAGATCGAATCTGCGACTGGCAAATATCTTTGCAAAAGGAGAATGCATAGATTCCATAGGTTACATTGACAGAGATAGAAAAGAAAGTTTGTAGCCTTCTTCTACATATTTTGCACCAGACATGTATTTCACTTAAAGATCATTTGTCATTTGATGTTCACTTTAAACTGGTAAATACTAATATTGTATAGTTATCATCCAAACTCGTGTTCTAAAATCCCTAATTAGTAACTTGAATTTGGATTTCATAGACAGACACTTGCAAATTTCCGTCAACCAGTTTCAAATGTTAAACAGAATTCGAGGGATGGAATAATGTACAATGCCTCACTGACCTTAG

Fln Alignment:

Contig2390___ALRFLGLLTGSWSPYAACLILDPMSVLQDLPFTFSSIFLDISWSSV
B9GI52_________________ALKFLGLLSGSCCKYGSLLTLDQLSVLSDLPVTLPSLVTEPSWEVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain