SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2276

Length: 370 nt

UniGene Fasta

>biog2_v2.0_unigene2276
ATGGGGGTGCTATGATGATAACATAGGATTTTGATACTAAGCATCTACCATTTAAGTACGATATCAATGAACAGGCCGTGGGCGAAAGATTGATTGTATGTATTGCGCCTCCCACCTCCATTGGAGATCACTGCCGTGCATACAAGTGTTCAGGAAGACCAATAAGCATCATGGCGGACGAGGAAACCGAAAACTTCAGTCCCCTTTTAACAGAAGACGGGCACGCAGAACCCAACTCTGAGGATCCAACCCAACAAGCTTCGAATCTTGCAGAAACGACACCGGAGCTTAGCTTGGAGAGGCTTAGCTTGGAGGATAAGTTCCAGCTGATACGCAGTGTGGGGAGGAGTGCATTCAAGAGAGCGAGTTG

Ace file of the UniGene biog2_v2.0_unigene2276

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3702	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Tyrosyl-tRNA synthetase n=3 Tax=Zea mays RepID=B6T638_MAIZE	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	tyrosyl-trna synthetase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Tyrosine--tRNA ligase.	EC:6.1.1.1	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	tyrosyl-tRNA aminoacylation	GO:0006437	Biological Process	85%
Blast2go	tyrosine-tRNA ligase activity	GO:0004831	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	CRAL-TRIO domain	IPR001251	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ic	IPR002305	-	-
Sma3	Tyrosyl-tRNA synthetase	IPR002307	-	-
Sma3		IPR008273	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3		IPR015624	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3		IPR016485	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB56

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 66 - 188

Fln protein: MADEETENFSPLLTEDGHAEPNSEDPTQQASNLAETTPELSLERLSLEDKFQLIRSVGRSAFKRAS

Protein Length: 67

Fln nts: ATGGGGGTGCTATGATGATAACATAGGATTTTGATACTAAGCATCTACCATTTAAGTACGATATCAATGAACAGGCCGTGGGCGAAAGATTGATTGTATGTATTGCGCCTCCCACCTCCATTGGAGATCACTGCCGTGCATACAAGTGTTCAGGAAGACCAATAAGCATC_-_ATGGCGGACGAGGAAACCGAAAACTTCAGTCCCCTTTTAACAGAAGACGGGCACGCAGAACCCAACTCTGAGGATCCAACCCAACAAGCTTCGAATCTTGCAGAAACGACACCGGAGCTTAGCTTGGAGAGGCTTAGCTTGGAGGATAAGTTCCAGCTGATACGCAGTGTGGGGAGGAGTGCATTCAAGAGAGCGAGTTG

Fln Alignment:

Contig2276___MADEETENFSPLLTEDGHAEPNSEDPTQQASNLAETTPELSLERLSLEDKFQLIRSVGRSAFKRA
D5AB56_________________MAEEEAQNNSPPSTQDGHEETNSENPAQQPSDLAETRPE-----LNLEEKFQLILSVGEECIQES

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
258	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain