SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2265

Length: 1381 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2265

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17582	75/77
SustainPine v2.0	sp_v2.0_unigene79392	1/77

Source	Descriptions	Term	Type	Identity
AutoFact	ADP-ribosylation factor [Medicago sativa] emb\|CAI29265.1\| ADP-ribosylation factor 1 [Medicago truncatula]	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	adp-ribosylation factor	-	-	97%

Source	GOs	Term	Type	Identity
Blast2go	protein ADP-ribosylation	GO:0006471	Biological Process	97%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	97%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	97%
Blast2go	intracellular	GO:0005622	Cellular Component	97%

Source	InterPros	Term	Type	Identity
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPS8

Fln msg:

Fln protein: MGLTFTKLFHRMFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVAEARDELHRMLNEDELRDAVLLVFANKQDLPNAMTAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*

Protein Length: 183

Fln nts: ATGGGGATTCACGCAACCTCGTTATGGATGCTTACCCTTTGCCCTTTCTCTCACCTGCAAACTGTCACTCACCACAACCTTCTGTTTAAAAGCGATTCCCCTTTTGGAAGATAAAAGCACAGAAGAATCAAATGTGACCACGCTGGGCAAAACACGGTCGGTGCGTAGAGTTTCTTTTAACCCAGGTTAAAACTTGGATATTTGAGTAGGAGATCACGTAGGAAAAACAAGGACTCCAGAGCGCACATCGTGCTGAGATTGAAGAAAGAGGTGCGAGTTCGATCGCCACTTTCACGCAGCAGATTCGAACTCTGAACATCTCGACAATTCCCCAAGCCGATCATTTAGTTTTTCGAATTCGGTGTAACATCCTCTTCTGAGTTTTGTGGGAGAGCTAGAAACTCAGCTTTTAAG_-_ATGGGTTTAACTTTCACCAAGCTATTCCATCGAATGTTTGCTAAGAGGGAGATGCGAATCCTTATGGTTGGACTTGATGCGGCTGGAAAGACTACTATTTTATACAAGTTGAAGCTGGGAGAGATTGTTACAACAATTCCCACCATTGGCTTTAATGTGGAGACTGTGGAGTACAAGAACATTAGCTTCACAGTTTGGGATGTGGGGGGTCAGGATAAGATTCGACCACTGTGGAGGCACTACTTTCAGAATACACAGGGTCTCATCTTTGTGGTGGATAGCAATGACAGAGACCGTGTAGCTGAGGCAAGAGATGAGTTGCACAGGATGTTGAATGAGGACGAGTTACGAGATGCAGTCCTGCTTGTGTTTGCAAACAAGCAAGATCTCCCAAATGCGATGACTGCTGCTGAAATCACTGATAAGCTTGGCCTGCACTCTTTACGCCAGCGACACTGGTATATTCAAAGCACTTGTGCGACTTCTGGTGAAGGCCTTTATGAAGGCCTGGATTGGCTTTCAAACAACATTGCAAACAAGGCTTAA___AAGATGTGGTTTGGTAACTGAGTTGGTACAGTGAATGGGTCCTAGTGATATGCATGCATTTGAAGTCTTTGCCGAAGAGTAAGGGACAAGGAGTCGTCTGGTGAATTGGCCCTTACATTTGTACCTAGAAGTAACAAATACTCTAATATTTTGTATTTATCTAAGAATTTGAGGGTTTTCCTTTTTGGCTCTATGCCATATATTGTGATTTCGGTTTCTTTTCTTTGTTGGAAGCTGATTATGAAAAAGTATTAGTTATATATGCTTGAAGCGAAGTGCAGAAATGCTAAATATTAGAAGCTCCAAAGGTTAGCAGTATATATTAAAGACTCGAAAAATTATGTAAGAGTTCGGAAAACTCCACGAGGATACATGAGATACCTGAGCATGGAACAAGAAAATAAAAGATAGAAATCGCTAC

Fln Alignment:

Contig2265___MGLTFTKLFHRMFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVAEARDELHRMLNEDELRDAVLLVFANKQDLPNAMTAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
B8LPS8_________________MGLTFTKLFQRMFAKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVAEARDELHRMLNEDELRDAVLLVFANKQDLPNAMTAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
846		93		6	0.999264
967	14			85	0.999981
968			85	14	0.999981
981	76		7		0.999983
988	75		16		0.99999
1058		81	18		0.999994
1103	70	30			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain