SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2259

Length: 800 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2259 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3025	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB45312.1\| putative protein [Arabidopsis thaliana] emb\|CAB79710.1\| putative protein [Arabidopsis thaliana] gb\|AEE85639.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Saposin B	IPR008139	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P283

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 18 aas, your sequence is shorter than subject: 261 - 314

Fln protein: AVARKEDIPYIKCGVCEQIVKQLDRQVTSKRNQIAPKRLSEYEIIEVAENICNLKKEEGDWLLHLDIVEDGDKLKLVEQEQEGDCNAECRTIERTCQEVIGYHDTDVAEYLFKSKAQSSALLKFLCNDLSKACSVKPPPVPKDRAPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNGEGEDDEEDEDDDYTSSRMRNIKKPVVSVESDWKKSLIDGVQSSFAHMKDQTQHAVIGAKRSLNRIL*

Protein Length: 262

Fln nts: TTGCAGTCGCTCGAAAAGAAGACATTCCTTACATTAAATGTGGAGTCTGCGAACAGATTGTCAAACAACTCGATCGTCAAGTGACGAGCAAACGCAATCAGATCGCCCCCAAGCGGCTCTCAGAATACGAGATTATAGAAGTAGCTGAAAATATTTGTAATCTGAAGAAGGAGGAGGGTGATTGGCTGCTTCATCTCGATATTGTGGAAGACGGGGACAAATTGAAGCTTGTTGAACAAGAGCAAGAGGGAGATTGTAATGCAGAGTGCAGGACCATAGAACGAACTTGCCAAGAGGTGATTGGATATCATGATACTGATGTTGCAGAATATTTATTTAAAAGCAAGGCTCAAAGTTCTGCGTTATTGAAGTTTCTTTGTAATGACCTCAGTAAAGCTTGTTCAGTCAAGCCACCCCCAGTTCCAAAGGATAGAGCACCAGGGGAGCCTTTTGTACCAAAGTCATCCAAAGAGGCTGAGATGGAAAAGATCATGAGATCTATGTCTGGCATGCCTGGAGCATCGAATATGAAAATGTACTCTAAGGATGACCTGATGAATATGCCAAATTTTGGGAGCAATGGGGAAGGTGAGGATGATGAGGAGGATGAAGATGATGATTACACTTCTTCTAGAATGAGAAACATTAAAAAACCTGTGGTGTCTGTAGAAAGTGATTGGAAGAAAAGTTTAATTGACGGAGTCCAATCCTCATTTGCTCATATGAAAGATCAAACTCAACATGCAGTTATTGGTGCAAAGCGGAGTCTTAACAGAATACTCTAACAAAATTAAGGAAGT

Fln Alignment:

Contig2259___AVARKEDIPYIKCGVCEQIVKQLDRQVTSKRNQIAPKRLSEYEIIEVAENICNLKKEEGDWLLHLDIVEDGDKLKLVEQEQEGDCNAECRTIERTCQEVIGYHDTDVAEYLFKSKAQSSALLKFLCNDLSKACSVKPPPVPKDRAPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNXXXXXXXXXXXXDYTSSRMRNIKKPVVSVESDWKKSLIDGVQSSFAHMKDQTQHAVIGAKRSLNRI
A9P283_________________AVARREDIPYIKCGVCEQIVKQLDRQVTSIRNQIAPKRLSEYQIIEVAENICNLKKEEGDWLLHLDIVEDGDKLKLVEQEQEGDCNAECKTIERTCQEVIGYHDTDVAEFLFKSEPQSSSLLKFLCNDLSRACSVKPPPVPKDRTPGEPFVPKSSKEAEMEKIMRSMSGMPGASNMKMYSKDDLMNMPNFGSNGEDEDDEEDEDDDYTSSRMRNTKRPLVSVESDWKKSLLDRVQSTFSNVKDRTQHAVLGAKWSLDRI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
439		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain