SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2251

Length: 396 nt

UniGene Fasta

>biog2_v2.0_unigene2251
CCAGTAACCTTTATCGATCAGATAGCTGTACTCTATCGATCAAATAACTGTAGACATCAATCCTTAAATATTTAAATAAACAGAGATTCCTGTATTTAATTGATACCCACAGCAACACCAGTAGATGCGGTTAAAGGTATCACGTAGTGGTCGTTACTCCGCCAATGCAATTGGAGTGGCTGCATCTCTGTCTGTTGTTTCTGTTTTCCACCGTAGTAGAAACAAATGGCTTTGCCACTTTCAGATTTATTGACAGCAGCAAGTTCTATACTACACTCTAAATATGAACATTTGAGGGTAGTTGATTGTAATAGCGGCATAGACATACGGGGAAGCAACAAAATGCGTTTCAATTTTGCAAGTCAGGAAATTTCCGCACTGGCATTTTCCTGTTCA

Ace file of the UniGene biog2_v2.0_unigene2251

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14436	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Putative serine acetyltransferase [Oryza sativa Japonica Group] gb\|EAY88416.1\| hypothetical protein OsI_09878 [Oryza sativa Indica Group]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	serine acetyltransferase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.3.1.3-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	cysteine biosynthetic process from serine	GO:0006535	Biological Process	87%
Blast2go	sulfate assimilation	GO:0000103	Biological Process	87%
Blast2go	serine O-acetyltransferase activity	GO:0009001	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	Hexapeptide transferase, conserved site	IPR018357	-	-
Sma3	Serine acetyltransferase, N-terminal	IPR010493	-	-
Sma3	Serine O-acetyltransferase	IPR005881	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXF4

Fln msg: Distance to subject end: 441 aas, your sequence is shorter than subject: 57 - 498

Fln protein: MALPLSDLLTAASSILHSKYEHLRVVDCNSGIDIRGSNKMRFNFASQEISALAFSCS

Protein Length: 58

Fln nts: CCAGTAACCTTTATCGATCAGATAGCTGTACTCTATCGATCAAATAACTGTAGACATCAATCCTTAAATATTTAAATAAACAGAGATTCCTGTATTTAATTGATACCCACAGCAACACCAGTAGATGCGGTTAAAGGTATCACGTAGTGGTCGTTACTCCGCCAATGCAATTGGAGTGGCTGCATCTCTGTCTGTTGTTTCTGTTTTCCACCGTAGTAGAAACAA_-_ATGGCTTTGCCACTTTCAGATTTATTGACAGCAGCAAGTTCTATACTACACTCTAAATATGAACATTTGAGGGTAGTTGATTGTAATAGCGGCATAGACATACGGGGAAGCAACAAAATGCGTTTCAATTTTGCAAGTCAGGAAATTTCCGCACTGGCATTTTCCTGTTCA

Fln Alignment:

Contig2251___MALPLSDLLTAASSILHSKYEHLRVVDCNSGIDIRGSNKMRFNFASQEISALAFSCS
A9NXF4_________________MALSLSDLLIAASDILHSKYEHTRVVDCNSSINIRRSNKMRFNFGSQGISALEFPCS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
121		75		25	0.996473
122		75	25		0.996473
123	75		25		0.996473
125			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain