SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2227

Length: 1280 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2227

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10857	20/21
SustainPine v2.0	sp_v2.0_unigene65517	1/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L1p/L10e family protein [Arabidopsis thaliana] emb\|CAB88283.1\| putative protein [Arabidopsis thaliana] gb\|AAL49900.1\| unknown protein [Arabidopsis thaliana] gb\|AEE79812.1\| ribosomal protein L1p/L10e family protein [Arabidopsis thaliana]	-	-	1.0e-28	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	ribosomal l1 domain-containing protein 1-like	-	-	0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	cellular macromolecule metabolic process	GO:0044260	Biological Process	59%
Blast2go	gene expression	GO:0010467	Biological Process	59%
Blast2go	primary metabolic process	GO:0044238	Biological Process	59%
Blast2go	intracellular non-membrane-bounded organelle	GO:0043232	Cellular Component	59%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR24

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 17 aas, your sequence is shorter than subject: 357 - 501

Fln protein: MVNRENESNGSQVSSRVSKEIVELAVELLLTVTNLKPKDQKPQGLGCNEFIYLVVTLKRRPDGTRTIPLSIPVPHPLFRLDGSQKICLIVGNGKEVLQAAETKIKEEDLHISKVFERKQLMAHCRTSEDREKLRLSFDLFMANKAVRIPKFTGLECPTDQRNMLPVDLTHQKWRGELESACSLAYISFISTGCVANVARVSHSSKEIVENVVAVIDSLVSAIPKKWNNIRHMYLKTLGSLDYSLxxxxxxxxxxxxxxxEKEAQIDRPKINGEEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLQCGVVAKSIDT

Protein Length: 358

Fln nts: ATGGGGCCACTTACGCATTGCCAATAAGTCGTTTTTGGTGTATGGTTTAGGGTTTTTGAGTGTCTGGGTCTTCTTATACACAATTTATTTTCACGGTTCCTTAACGATTCAACACAGAGAAGAATCTTCTTACGAGGTCTACTGAGGAGCGTTGCTTGGTAAGTTTGAAACTTCACCTTTCCTTCTTTCAGTTTCGTGCTTCATCAGTTGCC_-_ATGGTTAATAGAGAGAACGAAAGCAATGGATCCCAAGTATCCTCTCGAGTAAGCAAGGAAATAGTAGAATTAGCAGTAGAACTGCTCTTGACGGTGACTAATTTAAAGCCTAAGGATCAGAAACCTCAAGGCCTGGGTTGCAATGAGTTTATTTATTTGGTTGTTACGCTGAAAAGGAGACCTGATGGTACACGAACGATTCCCTTGAGCATCCCAGTACCTCATCCCCTGTTTCGTTTGGATGGAAGCCAAAAGATCTGTTTGATTGTCGGCAATGGAAAAGAGGTTTTACAAGCTGCCGAGACCAAGATTAAGGAGGAGGATTTACACATTTCAAAGGTCTTTGAGCGCAAACAGCTAATGGCTCATTGTAGGACATCCGAGGATAGGGAAAAACTGCGTCTGTCTTTTGATTTGTTCATGGCAAATAAAGCAGTGCGGATCCCTAAGTTCACAGGGTTAGAATGCCCCACAGATCAAAGGAATATGCTCCCCGTGGATTTGACCCACCAGAAATGGAGGGGAGAACTGGAGTCAGCTTGCAGTTTGGCTTATATCTCCTTTATCAGTACTGGTTGTGTTGCTAATGTGGCTAGGGTTTCTCATAGCAGCAAGGAAATAGTGGAGAATGTTGTTGCTGTTATCGACAGTCTTGTGTCCGCGATTCCGAAAAAGTGGAATAACATCCGTCATATGTATCTGAAGACCTTGGGCTCTCTGGACTATTCACTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAAAAGAAGCACAAATTGACCGACCAAAGATAAATGGGGAAGAAGGGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGATTTGCAATGTGGGGTCGTGGCCAAGAGCATCGATACTTC

Fln Alignment:

Contig2227___MVNRENESNGSQVSSRVSKXXXXXXXXXXXXXXXXKPKDQKPQGLGCNEFIYLVVTLKRRPDGTRTIPLSIPVPHPLFRLDGSQKICLIVGNGKEVLQA--AETKIKEEDLHISKVFERKQLMAHCRTSE--DREKLRLSFDLFMANKAVRIPKFTGL---ECPTDQRNMLPVDLTHQKWRGELESACSLAYISFISTGCVANVARVSHSSKEIVENVVAVIDSLVSAIPKKWNNIRHMYLKTxxxxxxxxxxxxxxxxxxxxxxEKEAQIDRPKINGEEGITGGLSSKKRTSDAEKTPNXXXXXXXXXXXXXXXXXXQDVGDGVPMDDSPTTPALEKIIESVDLQESVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGLSSKKRTSDAEKTPNXXXXXXXXXXXXXXXXXXQDVGDGVPMDDSPTTPALEKIIESVDLQESVDLQCGVVAKSID
B8LR24_________________MANRENENDESQVSSPVSKEIVELAVELLLKVINSKPKDQKPQRVDRKEFICLVVQLKMRVDSTSTIPESIPVPHPLFRFDGSQAICLIIGDEIEGLNAEVAENKIKDEGLPISKVFQCEKLQADCKTFKFKDRNKLCQSFDLFMAYKSV-VPIIPGLLWSTFPLNERYVVPVDLTHKQWRGELESACSLAIVSSKRSTCVAKVARVSQTSKEIVENVVAVIDRLVSVLPGKWNNISCMFLKTxxxxxxxxxxxxxxxxxxxxxxETGSEIDAPKMNGEAGIAGGLFSKKRIQHSEKTLDTKRKKGLSLEGKTECLNGQDVGDGVPKDDSPPTSGLEKNVESVDLQGGVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGVVSSKKRIQHAEKTPDTKRKKGLSLECKTGYLNGQDVGDGVPKDDSPQTSGLEKNVESVDLQG------GVVANSVD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
786			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain