SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2220

Length: 208 nt

UniGene Fasta

>biog2_v2.0_unigene2220
TTCGTAGAGGAAGAGGCTTGGCTGTGAGTTGTTAGCCCTTAAGGTTCAATAAACATTTGGGTCAGTGTCAGCTCAAATCCAAAGCTTCGGGTGATGCTTCCAAGAGTGGAATTCTGCATAATTTGAAAGGGCCAATGACCATGAAGAGATCGTTCTCTGGTGGCAAGTTTTTCCTCTCTAGGTATCACAGAGGCAGAAGTTCCATCCT

Ace file of the UniGene biog2_v2.0_unigene2220

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10994	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING-H2 finger protein ATL52 [Arabidopsis thaliana] sp\|Q9LF64.1\|ATL52_ARATH RecName: Full=RING-H2 finger protein ATL52 emb\|CAC01904.1\| RING-H2 zinc finger protein-like [Arabidopsis thaliana] gb\|AED92447.1\| RING-H2 finger protein ATL52 [Arabidopsis thalian	-	-	1.0e-33	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	ring finger	-	-	0.0	54%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	54%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXH2

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 68 - 413

Fln protein: RRGRGLAVSC*PLRFNKHLGQCQLKSKASGDASKSGILHNLKGPMTMKRSFSGGKFFLSRYHRGRSSI

Protein Length: 69

Fln nts: TTCGTAGAGGAAGAGGCTTGGCTGTGAGTTGTTAGCCCTTAAGGTTCAATAAACATTTGGGTCAGTGTCAGCTCAAATCCAAAGCTTCGGGTGATGCTTCCAAGAGTGGAATTCTGCATAATTTGAAAGGGCCAATGACCATGAAGAGATCGTTCTCTGGTGGCAAGTTTTTCCTCTCTAGGTATCACAGAGGCAGAAGTTCCATCCT

Fln Alignment:

Contig2220___FNKHLGQCQLXXXXXXXXXXXXILHNLKGPMTMKRSFSGGKFFLSRYHRGRSSI
A9NXH2_________________FNKHLGQYQLKSKASDDASKSGILHNLKGPMTMKRSFSGGKFFLSRYHRGRSSI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
44			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain