SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2186

Length: 464 nt

UniGene Fasta

>biog2_v2.0_unigene2186
TTGATCGACCAGACTCAGATTGTTCCTTCAAACCCTGAAGGTTGGTTTTGAATATTCGTTGTCCTAGGTGCTTGTCACACAGGTTCAACTTTAGGACTTAACCATGGGGACATATCTAAGTTGCCCAAAGACAGACAAGGTGTCAGAAGATGGAGAAAATTGCCAAATCAAATATGGTGCATCAAATATGCAAGGGTGGCGTGCCAGTATGGAAGATGCGCATGCAGCAGTTCTTGATTTTGATAGTTGCACATCGTTCTTTGGGGTCTATGATGGCCATGGAGGTAAAGTTGTTGCCAAGTTTTGTGCCAATATCTTCATCAAGTTGTAAAGTCGGAAGCTGATAAAAATGGTGATTTATGTGAAAGCCTTCAAACAGCATTTCTGAGGATGGATGAGATGATGAAGGGTCAAAGAGGGCGGAGGGAGTTAGCTATATTAGGGGATAAACAAAGTAGAGATAC

Ace file of the UniGene biog2_v2.0_unigene2186

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2178	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase [Arabidopsis thaliana] sp\|O81716.1\|P2C21_ARATH RecName: Full=Probable protein phosphatase 2C 21; Short=AtPP2C21; AltName: Full=AtPPC4;2 gb\|AAD23006.1\| putative protein phosphatase 2C [Arabidopsis thaliana] gb\|AAK92810.1\| putative prote	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein phosphatase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	83%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	83%
Blast2go	metal ion binding	GO:0046872	Molecular Function	83%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	83%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNL4

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 310 and 310, Distance to subject end: 216 aas, your sequence is shorter than subject: 120 - 337

Fln protein: MGTYLSCPKTDKVSEDGENCQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDGHGGKVVAKFCxxYLHQVVKSEADKNGDLCESLQTAFLRMDEMMKGQRGRRELAILGDKQSRD

Protein Length: 121

Fln nts: TTGATCGACCAGACTCAGATTGTTCCTTCAAACCCTGAAGGTTGGTTTTGAATATTCGTTGTCCTAGGTGCTTGTCACACAGGTTCAACTTTAGGACTTAACC_-_ATGGGGACATATCTAAGTTGCCCAAAGACAGACAAGGTGTCAGAAGATGGAGAAAATTGCCAAATCAAATATGGTGCATCAAATATGCAAGGGTGGCGTGCCAGTATGGAAGATGCGCATGCAGCAGTTCTTGATTTTGATAGTTGCACATCGTTCTTTGGGGTCTATGATGGCCATGGAGGTAAAGTTGTTGCCAAGTTTTGTxxxxxxTATCTTCATCAAGTTGTAAAGTCGGAAGCTGATAAAAATGGTGATTTATGTGAAAGCCTTCAAACAGCATTTCTGAGGATGGATGAGATGATGAAGGGTCAAAGAGGGCGGAGGGAGTTAGCTATATTAGGGGATAAACAAAGTAGAGATAC

Fln Alignment:

Contig2186___MGTYLSCPKTDKVSEDGENCQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDGHGGKVVAKFCAQYLHQVVKSEADKNGDLCESLQTAFLRMDEMMKGQRGRRELAILGDKQSRD
A9NNL4_________________MGTYLSCPKTDKVSEDGENGQIKYGASNMQGWRASMEDAHAAVLDFDSCTSFFGVYDGHGGKVVARFCAKYLHHVVKSEADRNGDLCESLQTAFLRMDEMMKGQRGQRELAILGDKENKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain