SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2130

Length: 1320 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene2130

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14654	117/149
SustainPine v2.0	sp_v2.0_unigene60689	28/149
SustainPine v2.0	sp_v2.0_unigene76831	2/149
SustainPine v2.0	sp_v2.0_unigene80056	1/149
SustainPine v2.0	sp_v2.0_unigene81167	1/149

Source	Descriptions	Term	Type	Identity
AutoFact	Probable aquaporin n=4 Tax=Picea RepID=O65045_PICMA	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	aquaporin	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	0.0	90%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aquaporin	IPR012269	-	0.0	-
Sma3	Major intrinsic protein	IPR000425	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNG2

Fln msg:

Fln protein: MAKEGGKEVEQQGYVAKDYTDPPPAALFDVGEFKLWAFYRAVIAEFIATLLFLYITVATVIGHKRNQAACGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMVAQCLGAICGCGLVKAFQKSYYDEYGGGANSVAHGYTKGVGLSAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHQKSWDDQWIFWVGPFLGAAGAAAYHQYILRAGAIKALGSFRSNPHV*

Protein Length: 284

Fln nts: ATGGGGACATTACTGACCACTCCAGTTTTTTCCTATTCCTTTTTCTGGTGCTATTGCTTGTCTCTCTGAGAACTTTCAGTTTTGTTCAAGAAAAAGCT_-_ATGGCTAAGGAAGGTGGCAAAGAAGTTGAGCAGCAGGGATATGTGGCCAAGGACTACACAGATCCCCCTCCAGCAGCTCTGTTTGATGTTGGAGAGTTTAAGTTATGGGCCTTCTACCGTGCAGTCATAGCAGAGTTCATTGCCACTTTGCTGTTTCTGTATATAACAGTGGCCACTGTCATTGGTCACAAGAGAAACCAGGCTGCCTGTGGCAGTGTTGGGCTCCTGGGCATTGCCTGGGCTTTTGGGGGAATGATCTTTGTGCTGGTCTACTGCACTGCTGGTATTTCAGGTGGGCATATCAACCCTGCTGTGACTTTTGGGCTGTTTTTGGCAAGGAAGGTGTCCTTGCCTAGGGCAGTTCTCTACATGGTGGCCCAGTGTTTGGGAGCCATATGCGGATGTGGGCTGGTGAAGGCGTTCCAGAAATCCTACTACGACGAATATGGAGGCGGAGCCAACTCTGTGGCTCACGGCTACACTAAAGGCGTGGGGCTGTCTGCTGAGATCATCGGCACTTTCGTCTTGGTTTACACTGTTTTCTCTGCCACTGATCCTAAGCGCAATGCTCGGGACTCCCATATCCCTGTATTGGCTCCATTGCCTATTGGGTTTGCAGTATTCATGGTGCATTTGGCGACCATCCCCATTACTGGCACAGGCATCAACCCTGCCAGGAGCTTCGGGGCAGCTGTCATCTATGGCCACCAAAAGTCCTGGGATGACCAGTGGATTTTCTGGGTAGGCCCATTCCTTGGAGCAGCAGGAGCAGCAGCTTATCATCAGTACATTCTGAGAGCAGGGGCCATCAAGGCCCTGGGATCCTTCCGCAGCAACCCCCATGTTTAG___AGCTTCTTCTCTTGTAAGAGGCCCTTGTAATAAAGCATACTGCTGCTGATTCTGTTGAAAGTTCAGGGTGATGATGAGGAGCTCGTTTTTGCCATGAAATAGCTCTCAGAAACCAACTTTGTAGTCACAATAGCAGCAGCTGCAACAGAATGTGTAGAAAGATGAGTTATTTTATTAGTGAGAGTTTTCTTGACATGTTACATAGTGATATGGAGTTTTTTCTTTTTGTTTTTTAGTGGAGGTGGGAGGGATGTTCATATTTTTCTTTTGCCTCCCTTGGGGAGGAGTGTATCCTGATGATTTCTGTCACAGATTTTCTTCTGTACTTGTCACGTTAGCCGTAATAAAACATTTTTACATCGTGCTTTTTTTC

Fln Alignment:

Contig2130___MAKEGGKEVEQQGYVAKDYTDPPPAALFDVGEFKLWAFYRAVIAEFIATLLFLYITVATVIGHKRNQAACGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMVAQCLGAICGCGLVKAFQKSYYDEYGGGANSVAHGYTKGVGLSAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHQKSWDDQWIFWVGPFLGAAGAAAYHQYILRAGAIKALGSFRSNPHV
A9NNG2_________________MAKEGGKEVEQQGFAAKDYKDPPPAALFDVSEFKLWAFYRAIIAEFIATLLFLYITVATVIGHKRNQAACGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVLYMVAQCLGAICGCGLVKAFQKSYYDQYGGGANSVAHGYTKGVGLSAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYGHQKIWDEHWIFWVGPFLGAAGAAAYHQYILRAGAIKALGSFRSNPHV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1182	66		33		0.997452
1184			33	66	0.997452
1242		14		85	0.993533
1288	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain