SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2111

Length: 1249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2111 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5486	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis thaliana] gb\|AAL07040.1\| putative oligosaccharyl transferase STT3 [Arabidopsis thaliana] gb\|AED92738.1\| dolichyl-diphosphooligosaccharide--protein glycosyltransferase [Arabidopsis	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3-like	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	89%
Blast2go	Various types of N-glycan biosynthesis	00513	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	protein glycosylation	GO:0006486	Biological Process	89%
Blast2go	response to salt stress	GO:0009651	Biological Process	89%
Blast2go	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Oligosaccharyl transferase, STT3 subunit	IPR003674	-	-
Sma3	MPPN	IPR007846	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABH2

Fln msg: STOP codon was not found. Distance to subject end: 275 aas, your sequence is longer than subject: 416 - 169

Fln protein: FSRFPFRLFSVIKYESVIHEFDPYFNYRVTKYLTKSGVYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTMWWVFNSLNIPLSVETVCVFTAPIFSANAAWATYLLTKEVKGVGAGLTAAAILAMVPSYISRSVAGSYDNEAVAIFALIFTFYLYIKTLNTGSLFYATLNALAYFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYSPLVVLGTLLAALVPVVGFNAVMTSEHFASFLVFIIVQVVALGHYIKRTVSAKMFKVAITLVISVGMFVSIALVAILVALVAASPTKGWSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAGIVACFLPLSDASSFLVLYIVTSVYFSGVMVRLMLVLAPAACILSGIALSEAFTVLTRSVKFQLSLS

Protein Length: 417

Fln nts: ATTCTCGCGTTTTCCATTCCGGCTTTTTTCGGTCATCAAGTATGAGAGCGTCATTCATGAGTTCGATCCTTACTTCAATTACAGAGTTACAAAGTATCTCACAAAGAGTGGAGTCTACGACTTTTGGAACTGGTTCGATGACCGAACCTGGTACCCACTGGGACGTGTCATTGGGGGAACAGTGTATCCTGGTCTCACTTTGACAGCAGGGACAATGTGGTGGGTATTTAATTCTCTCAACATCCCGCTTTCCGTAGAAACTGTTTGTGTCTTCACTGCTCCCATCTTCTCAGCAAATGCAGCTTGGGCAACATATCTTTTGACAAAGGAAGTTAAAGGTGTTGGTGCAGGCCTCACTGCAGCAGCCATTCTAGCAATGGTGCCTTCATACATCTCACGATCCGTGGCTGGCAGTTATGATAATGAGGCTGTAGCTATATTTGCTTTGATCTTTACATTCTATCTATATATCAAGACATTGAACACTGGATCCCTCTTTTATGCTACTTTAAATGCCTTAGCTTACTTTTATATGGTCTGTTCCTGGGGAGGTTACACTTTCATAATAAATCTTATTCCAATGCATGTTCTTCTATGTATTGTGACCGGCCGGTACTCATCTCGTCTTTACATTGCTTATTCACCTCTGGTAGTTTTGGGTACTTTGCTGGCTGCTCTTGTTCCTGTTGTTGGTTTCAACGCAGTCATGACATCTGAGCATTTTGCGTCATTCCTGGTGTTTATCATAGTTCAGGTTGTCGCGTTGGGGCATTATATAAAGCGTACTGTGTCAGCTAAGATGTTCAAAGTGGCAATAACTCTTGTAATTTCTGTTGGAATGTTTGTGTCTATTGCATTGGTAGCAATATTGGTTGCGTTAGTGGCAGCAAGTCCCACAAAGGGATGGAGTGGACGAAGTCTAAGTCTTCTTGATCCGACCTATGCGAGCAAGTATATTCCTATTATTGCGAGTGTCAGTGAACATCAACCACCTACTTGGCCTTCATATTTTATGGATATAAATGTACTAGCATTTCTAGTCCCTGCAGGCATCGTTGCATGTTTCTTGCCATTGTCGGATGCAAGCTCCTTTTTGGTTCTCTACATTGTGACATCTGTGTACTTTTCTGGTGTAATGGTTCGGCTTATGCTAGTGCTGGCTCCAGCAGCTTGTATTTTATCTGGCATTGCTCTTTCTGAAGCTTTTACAGTACTAACACGATCAGTCAAATTTCAGCTCTCTCTCTCA

Fln Alignment:

Contig2111___FPFRLFSVIKYESVIHEFDPYFNYRVTKYLTKSGVYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTMWWVFNSLNIPLSVETVCVFTAPIFSANAAWATYLLTKEVKGVGAGLTAAAILAMVPSYISRSVAGSYDN
D5ABH2_________________FSIRLFSVIKYESVIHEFDPYFNYRVTKYLTKSGVYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTMWWVFNALNIPLSVETVCVFTAPIFSANAAWATYLLKKEVKGIGAGLTAATILAMVPSYISRSVAGSYDN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
910	75	25			0.996473
912		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain