SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2093

Length: 1880 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2093 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17852	52/53

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome subunit RPN5b n=1 Tax=Elaeis guineensis RepID=B3TM04_ELAGV	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	26s proteasome non-atpase regulatory subunit 12-like	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organismal development	GO:0007275	Biological Process	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	88%
Blast2go	proteasome complex	GO:0000502	Cellular Component	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR46

Fln msg: your sequence is longer than subject: 484 - 120

Fln protein: MSAMEEEASTGPPDAGRPSARPAGADLDSIDREIAAQRKVALQEGKLDAAIDALSNIEKQMRLAADVSGTRKVVVAIVQICYEARAWKTLSEQISVLSKKRAQLKQAVTAMVQQAMQYIDETPDLDTRVELIKTLNNVSAGKIYVEIERARLVRKLAKIKEEQGLIAEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRKDYMRAQILSRRISPKAFDAGTLKEKKKPKEGDNMVEEAPPDIPSLLELKRIYYELMIRYYSHNNDYLEICRSYKAIYDIPSVKEDPAQWIPVLRKICWYLVLSPHDPMQSSLLNATLEDKKLLEIPKFRALLKHFVTMEVIQWVPFWEIYQAEFGQERTMPGGFLGDKAAEDLRQRVIEHNILVVSKYYSRISLARLAELLCLSVQETEKHLSDMVVLKSLVAKVDRPAGIVCFRAAKDSNEILNSWAINIEKLLDLVEKSCHQIHKETMVHKAPLKVQ*

Protein Length: 485

Fln nts: ACATGGGAGTCCTACCATTTCTTAGCATTCGCTTCATTCACTGAAGCTGTTAAAACAAAGTCGAAACCCTATTTTCCAACTCTCTTAAAGTTTACCTCTGTATTTCGTGCTCTTATTTTGCTTGCAGATCTCTCTCCGGCTGCCCAGCAACTGCTGCTTTGTTCGTATCTGTTATTCCGTACAATTTGACCGCCATTACTGCGTTTTTTGAGCCATTTGGAGACGCAGAGGGCTCTGATTAGGGTTTCATTTGACAACC_-_ATGAGCGCTATGGAGGAAGAAGCTTCCACGGGACCTCCGGACGCTGGTCGTCCCTCCGCGAGGCCTGCCGGAGCCGATCTGGACTCTATTGACCGCGAAATTGCTGCGCAGAGGAAAGTAGCCCTCCAGGAAGGCAAATTGGATGCTGCAATAGATGCTCTTTCAAATATAGAGAAGCAGATGAGGCTTGCTGCTGATGTTTCTGGAACTCGAAAGGTGGTAGTGGCGATAGTGCAGATTTGTTATGAAGCGCGTGCATGGAAGACACTAAGTGAGCAAATTAGTGTTCTTTCCAAGAAAAGAGCACAGCTGAAGCAGGCAGTCACTGCGATGGTTCAGCAAGCCATGCAATATATTGATGAGACACCTGACCTCGATACACGTGTTGAACTGATCAAAACACTGAATAATGTCTCAGCTGGGAAGATTTATGTCGAAATAGAAAGGGCCCGGTTGGTTAGGAAGCTTGCAAAAATCAAGGAGGAGCAGGGTCTTATTGCCGAGGCTGCTGACTTAATGCAAGAAGTTGCTGTGGAGACATTTGGAGCAATGGCAAAGACAGAAAAAATTGCATTCATTCTCGAACAAGTTCGACTTTGTTTGGATCGTAAGGATTACATGCGTGCTCAGATTCTTTCTAGGAGGATCAGCCCTAAAGCATTTGATGCTGGTACATTGAAAGAGAAGAAAAAACCAAAAGAGGGTGATAACATGGTTGAAGAGGCTCCTCCTGATATCCCTTCACTTCTGGAGTTGAAGCGCATATACTATGAACTGATGATTAGGTATTACTCTCACAATAATGATTATCTGGAAATCTGCCGTAGCTACAAGGCAATTTATGATATACCTTCGGTGAAGGAAGACCCAGCACAATGGATTCCTGTGCTGAGAAAAATCTGTTGGTACCTAGTCCTGTCACCACATGACCCTATGCAGTCGAGCCTTCTGAATGCCACCTTGGAAGATAAAAAGCTATTAGAGATTCCTAAATTTCGTGCATTGTTGAAGCACTTTGTTACTATGGAAGTGATACAATGGGTTCCGTTTTGGGAGATATACCAAGCTGAATTTGGGCAGGAAAGAACTATGCCTGGAGGATTTTTAGGTGATAAAGCTGCGGAGGACTTAAGGCAGCGTGTTATTGAGCATAATATTTTAGTTGTTTCGAAATATTATTCAAGAATTAGTTTGGCACGACTTGCAGAACTACTGTGCCTCAGTGTTCAGGAAACTGAAAAACACCTCTCAGACATGGTTGTTTTGAAGTCTTTGGTGGCAAAGGTGGATAGGCCTGCTGGTATTGTTTGTTTCCGGGCTGCTAAAGACAGCAATGAAATTCTCAATTCATGGGCCATCAATATTGAGAAACTACTGGATCTTGTTGAGAAAAGCTGCCATCAAATTCACAAGGAAACAATGGTTCATAAGGCTCCTTTGAAAGTTCAGTAG___GTTGAACACGAGGAATAAAGCAATTCAAACCATTATTTGTTTAGGCTCATAGACTGTAGCAGATTGTACGGACATCAATTTACTCGGTGCAATTTTGATAGCACAAATGAAAATTTGATATCTGTTTCCCTGCCATTTAGGACATCTAAAAGTGAGATCATCTGCGATG

Fln Alignment:

Contig2093___MPGGFLGDKAAEDLRQRVIEHNILVVSKYYSRISLARLAELLCLSVQETEKHLSDMVVLKSLVAKVDRPAGIVCFRAAKDSNEILNSWAINIEKLLDLVEKSCHQIHKETMVHKAPLKVQ
A9NR46_________________MPGGFLGDKAAEDLRQRVIEHNILVVSKYYSRISLARLAELLCLSVQETEKHLSDMVVLKSLVAKVDRPAGIVCFRAAKDSNEILNSWAINIEKLLDLVEKSCHQIHKETMVHKSPLKVQ

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
1136		16		83	0.994512
1181		16		83	0.994512
1183		16		83	0.994512
1194	75		25		0.996473
1204	80			20	0.995493
1342	85	14			0.993533
1343	85	14			0.993533
1344		14		85	0.993533
1345	14			85	0.993533
1407		85		14	0.993533
1408		85	14		0.993533
1456	87		12		0.992554
1499	87		12		0.992554
1555	12		87		0.992554
1575	12		87		0.992554
1596		12		87	0.992554
1597		11	88		0.923564
1598		11	88		0.923564
1600	88			11	0.923564
1660		16		83	0.994512
1665	83	16			0.994512
1666	83	16			0.994512
1761	83	16			0.994512
1762	83	16			0.994512
1763		16	83		0.994512
1766	83			16	0.994512
1771	80	20			0.995493
1772	80	20			0.995493
1773		20	80		0.995493
1775			80	20	0.995493
1858		33	66		0.997452
1859	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain