SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene2005

Length: 765 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene2005 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6718	26/34
SustainPine v2.0	sp_v2.0_unigene60332	8/34

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L26-2 n=2 Tax=Arabidopsis RepID=RL262_ARATH	-	-	3.0e-37	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	60s ribosomal protein l26	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, Acting on acid anhydrides; catalyzing transmembrane movement of substances.	EC:3.6.3.-	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	proton transport	GO:0015992	Biological Process	98%
Blast2go	translation	GO:0006412	Biological Process	98%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	98%
Blast2go	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO:0016820	Molecular Function	98%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	98%
Blast2go	vacuolar proton-transporting V-type ATPase complex	GO:0016471	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Ribosomal protein L24, SH3-like	IPR014723	-	-
Sma3	Ribosomal protein L26/L24P, eukaryotic/archaeal	IPR005756	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
464	85	14			0.993533
466	14	85			0.993533
469	83		16		0.994512
483		16		83	0.994512
484	16			83	0.994512
580		25	50		1.0
582	75		25		0.996473
596	80		20		0.999996
627		10		90	0.90298
637		10		90	0.90298
675		58		41	1.0
722		71		28	1.0
730		16	83		0.994512
734		25	75		0.996473
735		25	75		0.996473
736	75	25			0.996473
737	80	20			0.995493
738	25		75		0.996473
741		66	33		0.997452
743	33	66			0.997452
744	33	66			0.997452
745	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain