SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1989

Length: 885 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1989 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5995	12/13

Source	Descriptions	Term	Type	Identity
AutoFact	phytanoyl-CoA dioxygenase (PhyH)-like protein [Arabidopsis thaliana] gb\|AAL15340.1\| At2g01490/F2I9.11 [Arabidopsis thaliana] gb\|AAC67325.2\| expressed protein [Arabidopsis thaliana] gb\|AAM51599.1\| At2g01490/F2I9.11 [Arabidopsis thaliana] gb\|AEC05460.1\| phy	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phytanoyl-CoA dioxygenase.	EC:1.14.11.18	-	0.0	79%
Blast2go	Oxidoreductases, Acting on single donors with incorporation of molecular oxygen, With incorporation of two atoms of oxygen.	EC:1.13.11.-	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Benzoate degradation	00362	79%
Blast2go	Tryptophan metabolism	00380	79%
Blast2go	Arachidonic acid metabolism	00590	79%
Blast2go	Xylene degradation	00622	79%
Blast2go	Toluene degradation	00623	79%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	79%
Blast2go	Naphthalene degradation	00626	79%
Blast2go	Aminobenzoate degradation	00627	79%
Blast2go	Nitrotoluene degradation	00633	79%
Blast2go	Betalain biosynthesis	00965	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	phytanoyl-CoA dioxygenase activity	GO:0048244	Molecular Function	79%
Blast2go	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	79%
Blast2go	plasma membrane	GO:0005886	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phytanoyl-CoA dioxygenase	IPR008775	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
700	75	25			0.996473
701		25	75		0.996473
702		25		75	0.996473
703		25		75	0.996473
704	25			75	0.996473
791		25	25		0.995533
792	25	50	25		0.995533
793	25	50		25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain