SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1968

Length: 999 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1968 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8919	20/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	reticulon-like protein B16 [Arabidopsis thaliana] sp\|Q8GYH6.1\|RTNLP_ARATH RecName: Full=Reticulon-like protein B16; Short=AtRTNLB16 dbj\|BAC42275.1\| unknown protein [Arabidopsis thaliana] gb\|AAO50641.1\| unknown protein [Arabidopsis thaliana] gb\|AEE74972.1\|	-	-	1.0e-38	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	reticulon-like protein b12	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Reticulon	IPR003388	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADD4

Fln msg:

Fln protein: MADASDIPSAVESNVNTPIEKSSELLAPETVDSPADNVTPTRYRLFNRQKTIHEVLGGGMTADVMLWRRRVLSIGVLVVATAAWYLFERSGYTFLSLISSILLLLVAILFIWANAASLLQRPLPPLPELELSEEIVNEVAASMRVRINDVLAVAHDIALGKDIKLFAKAVIFLWLFSIFGGWFNFLTLVYIGLFVSLTIPALYNKYEDHVDRNAEIAHKQIVKQYRNLDANVLSKIPRGLSKDKKMQ*

Protein Length: 249

Fln nts: GCTGAGATTTGGCGTCAAGAGCCCTGATCTAGCGTTGGCGTCAAGAGGTCTGATCTTCGCAGGGAGAGGCAGTTCAGGGTTTTGCAAGTTTTCTTCAAAACCTATTTAATAAAA_-_ATGGCGGATGCGTCAGACATCCCTTCTGCTGTGGAATCGAATGTTAATACGCCGATTGAGAAGTCATCAGAGCTTCTTGCACCAGAGACCGTGGATTCTCCTGCGGACAATGTGACGCCTACTCGATATCGGCTCTTCAACCGCCAGAAAACCATTCATGAAGTCTTAGGCGGAGGAATGACTGCTGATGTGATGCTATGGAGGAGAAGAGTTTTAAGTATTGGCGTACTTGTCGTTGCTACTGCTGCGTGGTATTTGTTTGAGAGATCAGGATATACGTTCTTGTCACTTATTTCCTCTATTCTTCTACTTTTGGTAGCTATTTTGTTTATCTGGGCAAATGCTGCGTCTCTCCTCCAGAGGCCACTACCTCCTCTGCCTGAATTGGAATTATCAGAAGAAATAGTAAACGAGGTAGCTGCTTCCATGCGTGTGAGAATTAATGACGTTCTAGCAGTAGCACATGATATTGCCCTTGGCAAAGACATTAAGCTTTTTGCAAAGGCGGTCATCTTTTTGTGGCTATTTTCAATTTTTGGTGGGTGGTTCAACTTCCTTACACTTGTCTATATTGGTCTTTTTGTTAGCCTAACAATTCCTGCATTGTACAACAAGTATGAGGATCATGTTGATAGAAATGCAGAAATAGCACATAAGCAAATTGTAAAGCAATACAGGAACCTTGATGCAAATGTTTTAAGCAAGATTCCAAGGGGATTGTCCAAAGACAAAAAGATGCAGTAA___GCTCTGGCCCTCAATGCAGGAAAGATCTGGTTTTGTGACATAATGGCGGCCTGAACATATGAATGTATAAACTTTGCTTGGAAAGTTATCAATTATTGTGAAGTTTGTCCATGTAGCTTGTCTATTGTTAGAACTTGGGAC

Fln Alignment:

Contig1968___MADASDIPSAVESNVNTPIEKSSELLAPETVDSPADNVTPTRYRLFNRQKTIHEVLGGGMTADVMLWRRRVLSIGVLVVATAAWYLFERSGYTFXXXXXXXXXXXXXXLFIWANAASLLQRXXXXXXXXXXXXEIVNEVAASMRVRINDVLAVAHDIALGKDIKLFAKAVIFLWLFSIFGGWFNFLTLVYIGLFVSLTIPALYNKYEDHVDRNAEIAHKQIVKQYRNLDANVLSKIPRGLSKDKKMQ
D5ADD4_________________MADAADNSSAVDSYVNTPIDKSPELLGSETLDSPADNVPPAPYRLFNRQKTIHEVFGGGMAADVMLWRRRGICIGVLVAATAAWYLFERSGYTFLSLISTILLLLVAILFIWANAASLLQRPLPPLPELELSEEIVNKVAASMRVRINDVLAVAHDIALGKDIKLFAKAVVFLWLFSIFGGWFNFLTLVYTGLLISLTIPALYNKYEDHVDRNAEIAHKQIVKQYRNLDANVLSKIPRGFSKDKKMQ

SNPs (tot: 3)

Position	A %	G %	T %	Probability
810	16	83		0.994512
839		80	20	0.995493
883	80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain