SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1967

Length: 461 nt

UniGene Fasta

>biog2_v2.0_unigene1967
TGGATCGGCCCATGTATTTGTTAGGCTACCTTGCAAGTCAGAGCCGAGTATTCCTAATTGACAAAGAGTTCAATGTAGTGGGTTACACATTGCTTCTTAGCTTGATAGAGTACAAGACCCTTGTTCTGCGCGGAGACCTGGATAGGGCGAATGAGATTCTTCCCACGATTCCTAAGGAACAACTTAACAATGTGGCTCATTTCTGGAGTCTCGTGGTATGCTGGATGAGGCACTTGAAGTGGCTGTGGACCCTGATTACAAATTTGATCTAGCTATTCAACTTGGAAGAATTGGAGTAGCAAAGTCAATTGCAGTAGAAGCACAAAGTGAATCGAAATGGAAACATTTAGGAGAGCTAGCTATGTCTGCTGGAAAGTTAGACTTGGCAGAGGAATGTCTCAGCCATGCAGCTGACCTAAGTGGATTGTTGCTTCTCTACTCTGCTCTAGGAGATGCAGAAG

Ace file of the UniGene biog2_v2.0_unigene1967

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6498	3/4
SustainPine v2.0	sp_v2.0_unigene26040	1/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coatomer subunit beta'-2 [Arabidopsis thaliana] sp\|Q9C827.1\|COB22_ARATH RecName: Full=Coatomer subunit beta'-2; AltName: Full=Beta'-coat protein 2; Short=Beta'-COP 2 gb\|AAG51545.1\|AC037424_10 coatomer complex subunit, putative; 33791-27676 [Arabidopsis th	-	-	0.0	76%
FL-Next	Isoform 2 of Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980	-	-	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Coatomer beta' subunit	IPR016453	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L828-2

Fln msg: Overlapping hits, possible frame ERROR between 203 and 200, Distance to subject end: 207 aas, your sequence is shorter than subject: 153 - 918

Fln protein: DRPMYLLGYLASQSRVFLIDKEFNVVGYTLLLSLIEYKTLVLRGDLDRANEILPTIPKEQLNNVAxxxESRGMLDEALEVAVDPDYKFDLAIQLGRIGVAKSIAVEAQSESKWKHLGELAMSAGKLDLAEECLSHAADLSGLLLLYSALGDAE

Protein Length: 154

Fln nts: TGGATCGGCCCATGTATTTGTTAGGCTACCTTGCAAGTCAGAGCCGAGTATTCCTAATTGACAAAGAGTTCAATGTAGTGGGTTACACATTGCTTCTTAGCTTGATAGAGTACAAGACCCTTGTTCTGCGCGGAGACCTGGATAGGGCGAATGAGATTCTTCCCACGATTCCTAAGGAACAACTTAACAATGTGGCTxxxxxxxxxGAGTCTCGTGGTATGCTGGATGAGGCACTTGAAGTGGCTGTGGACCCTGATTACAAATTTGATCTAGCTATTCAACTTGGAAGAATTGGAGTAGCAAAGTCAATTGCAGTAGAAGCACAAAGTGAATCGAAATGGAAACATTTAGGAGAGCTAGCTATGTCTGCTGGAAAGTTAGACTTGGCAGAGGAATGTCTCAGCCATGCAGCTGACCTAAGTGGATTGTTGCTTCTCTACTCTGCTCTAGGAGATGCAGAAG

Fln Alignment:

Contig1967___DRPMYLLGYLASQSRVFLIDKEFNVVGYTLLLSLIEYKTLVLRGDLDRANEILPTIPKEQLNNVAHxLESRGMLDEALEVAVDPDYKFDLAIQLGRIGVAKSIAVEAQSESKWKHLGELAMSAGKLDLAEEC
Q8L828-2_______________DRPMYLLGYIANQSRVYLVDKEFNVIGYTLLLSLIEYKTLVMRGDLDRANQILPTIPKEQHNNVAHxLESRGMIEDALEIATDPDYKFDLAIQLGRLEIAKEIAEEVQSESKWKQLGELAMSSGKLQLAEDC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
415		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain