SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1960

Length: 1002 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1960

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28235	8/8

Source	Descriptions	Term	Type	Identity
AutoFact	MAP3K-like protein kinase [Arabidopsis thaliana] emb\|CAB80361.1\| MAP3K-like protein kinase [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	59%
Blast2go	pi-plc x domain-containing protein at5g67130-like	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3		IPR004141	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-
Sma3	Strictosidine synthase, conserved region	IPR018119	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAN6

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 333 - 389

Fln protein: DSDCVAGLQCISCSSVGDMSYRCTRTKTTDPSLQVGGLPFNKYSWLTTHNSYAIIGEKSYTGVQRITFNNQEVSVTDQLNNGTRGLMLDMYDFENDVWLCHSFGGNCYNFTAFMPAVNTLKEIQAFLAANPSEIVTIFIEDYVKATKGLTKVFTAAGLMKYWYPVSAMPKNGSDWPTVSDMVAKNYRLIVFTSIASKEASEGIAYQWNYVVENQYGDAGLVAGNCTNRAESKNLSSKAQSLVLENFFPDQPSVPKACVDNSDQLLNILSVCHQAAGNRWANFLAVDFFQRSYGGGAFQAVDKLNGELICGCSDISQCKANSTYGVCPKSSSST

Protein Length: 334

Fln nts: GGACAGTGACTGTGTCGCGGGTCTTCAATGCATATCGTGTAGTTCAGTGGGCGACATGAGTTACAGATGCACCAGGACTAAAACTACAGATCCATCTTTACAGGTGGGCGGCCTGCCTTTCAATAAATACTCATGGCTGACGACCCACAATTCTTATGCAATCATCGGAGAAAAATCGTACACGGGTGTCCAAAGAATCACTTTCAATAACCAAGAAGTTAGCGTTACGGATCAGCTTAATAATGGTACTAGAGGGCTAATGTTGGACATGTATGATTTCGAGAATGATGTTTGGCTCTGTCATTCCTTCGGAGGCAATTGCTACAATTTCACAGCTTTTATGCCAGCTGTGAATACATTGAAGGAGATTCAGGCATTTCTGGCTGCCAATCCCTCTGAAATCGTCACCATATTCATCGAGGACTATGTCAAAGCTACCAAAGGTTTGACCAAAGTCTTCACCGCAGCCGGATTGATGAAGTACTGGTACCCAGTCTCCGCCATGCCCAAAAATGGCAGCGATTGGCCCACTGTGAGCGACATGGTCGCGAAAAACTATCGCCTTATAGTATTCACCTCAATAGCCTCCAAAGAGGCCTCAGAGGGAATTGCTTACCAGTGGAACTACGTGGTGGAAAATCAATATGGGGACGCTGGTTTGGTGGCAGGAAATTGCACTAATCGCGCTGAATCGAAGAATTTAAGCTCAAAAGCCCAGTCGCTGGTTCTCGAGAATTTCTTCCCAGATCAGCCCAGTGTACCCAAAGCCTGCGTAGATAATTCCGATCAGCTCTTAAATATTCTGAGCGTGTGCCACCAGGCTGCAGGAAACCGATGGGCTAATTTCTTGGCAGTGGACTTCTTTCAGAGAAGCTATGGGGGAGGTGCATTCCAAGCTGTAGATAAACTGAACGGAGAACTGATTTGCGGATGCAGTGACATTAGTCAGTGCAAGGCAAACTCAACCTACGGAGTATGCCCAAAATCCAGCTCCAGCACCGA

Fln Alignment:

Contig1960___DSDCVAGLQCISCSSVGDMSYRCTRTKTTDPSLQVGGLPFNKYSWLTTHNSYAIIGEKSYTGVQRITFNNQEVSVTDQLNNGTRGLMLDMYDFENDVWLCHSFGGNCYNFTAFMPAVNTLKEIQAFLAANPSEIVTIFIEDYVKATKGLTKVFTAAGLMKYWYPVSAMPKNGSDWPTVSDMVAKNYRLIVFTSIASKEASEGIAYQWNYVVENQYGDAGLVAGNCTNRAESKNLSSKAQSLVLENFFPDQPSVPKACVDNSDQLLNILSVCHQAAGNRWANFLAVDFFQRSYGGGAFQAVDKLNGELICGCSDISQCKANSTY
D5AAN6_________________EGDCGSGLYCSTCQAVGQNQPVCVRGQATIVTSIVNGLPFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDSVTNQLNNGVRGLMLDMYDFMGDVWLCHSLQGQCYNFTAFEPAINTLREVEAFLSLNPTEIVTIFIEDYVHAIKGLTKVFTDAGLSKYWFPVSKMPMNGEDWPTVTEMVANNQRLVVFTSMPSKEATEGIAYQWRYITENEPGDGGIKPGSCSNRKESVPLNSKAAILFLMNYFPTIPDQSGTCKDHSTSLIQMLNVCYHGAG-KAPNFIAVNFYMRSDGGGVFDAVDRVNGRSLCGCNTVAACQVLNSF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
354	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain