SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1936

Length: 311 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene1936
GTCAAAATGTGGGAAACCGTCTCAACCCGAAAGGCAAAGTAGACAATGAAGGTGGGGAGAGCAGTGTCAAGTTAGCACTGGCCCAGCGGCGGATGGAAGAAATGAAATACAAGATCTTTGAACTTAAATTCATGGTGGAAAAGGGCTTCTCGGACGCTAGAGCTAACAAGCGCGGCAGTGTTCGAAGAAGCCCTGTTCGCCCGACAAATAAAAGGATGAACAGAATCATGATCGTTGATTGCAGAGATGGAGACTCCACAACAAATCAACTGCAATCTTCAAGTGTAAGAGGGACTGAGAGGATTCATCCT

Ace file of the UniGene biog2_v2.0_unigene1936 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene435	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Ulp1 protease family protein, putative [Solanum demissum]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	60%
Blast2go	sentrin sumo-specific	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABE8

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 103 - 260

Fln protein: QNVGNRLNPKGKVDNEGGESSVKLALAQRRMEEMKYKIFELKFMVEKGFSDARANKRGSVRRSPVRPTNKRMNRIMIVDCRDGDSTTNQLQSSSVRGTERIHP

Protein Length: 104

Fln nts: GTCAAAATGTGGGAAACCGTCTCAACCCGAAAGGCAAAGTAGACAATGAAGGTGGGGAGAGCAGTGTCAAGTTAGCACTGGCCCAGCGGCGGATGGAAGAAATGAAATACAAGATCTTTGAACTTAAATTCATGGTGGAAAAGGGCTTCTCGGACGCTAGAGCTAACAAGCGCGGCAGTGTTCGAAGAAGCCCTGTTCGCCCGACAAATAAAAGGATGAACAGAATCATGATCGTTGATTGCAGAGATGGAGACTCCACAACAAATCAACTGCAATCTTCAAGTGTAAGAGGGACTGAGAGGATTCATCCT

Fln Alignment:

Contig1936___QNVGNRL-----NPKGKVDNEGGESSVKLALAQ--RRMEEMKYKIFELKFMVEKGFSDARANKRGSVRRSPVR-----PTNKRMNRIMIVDCRDGDSTTNQLQSSSVRGTERIHP
D5ABE8_________________QNVENRVIVKLRNPKGKLDVGGGESSVELSWSSMDRRIEEMKYKTLETNFMVKEGFADPRANKRDSVQRRSVYKGLAVPRNKRMKRTTIVDCKDGDSTTSQLQSSSVSGPEKIHP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain