SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1924

Length: 1585 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1924

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16309	43/126
SustainPine v2.0	sp_v2.0_unigene21434	6/126
SustainPine v2.0	sp_v2.0_unigene22278	2/126
SustainPine v2.0	sp_v2.0_unigene22796	13/126
SustainPine v2.0	sp_v2.0_unigene60307	62/126

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=60S acidic ribosomal protein P0 gb\|AAB63814.1\| acidic ribosomal protein P0 [Glycine max]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	60s acidic ribosomal protein p0	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	90%
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	gene expression	GO:0010467	Biological Process	90%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein 60S	IPR001813	-	0.0	-
Sma3	Ribosomal protein L10/acidic P0	IPR001790	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9F2

Fln msg: your sequence is longer than subject: 322 - 266

Fln protein: MGFKGTKAEKKVVYDKKICDLLEQYSQVLICVADNVGSKQLQGIRAGLRPDSVVLMGKNTMMKRSIRLYAEKSGNTAYQNLIPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLIVQSVYDNGSVFDPEVLDLTEDDLIEKFAAGISTVTALSLAISYPTIAAVPHAIINGYKNVLAVAIELDYSFPLAEKVKEYLKDPSKFAVAAAPVAGATEAAPAAAAPKEEEKKPEPEEESEEDMGFSLFD*

Protein Length: 323

Fln nts: ATGGGCTCTGCACCTCTCGGTGCAATAACTAGTTATAAACCCTAGAATATTAGGGTTTATTGACACATATCATAGATTTTAGGGTTTATTGATACCTACCATAGATTCGATTCGAGTGCATTCCGTGGTTGCGGCTGAGTCGGGGCAACAGCTTCAAAATGGTCTTACGGGCTTGGTGCGCTCCTGTAAGCTCGGGGGGACAAAGTAGCAATATAGAGAAATTTTCTTAAATAACTTTTTATTTCTTCTACCAACGAACGAATACTGCGTACCATGCTTCTGGTGCTTCCTTTGGTACAACGAAAAACGTAATCGCGTATACAAAAGTGGGGTGCCAAA_-_ATGGGGTTTAAGGGAACCAAGGCCGAGAAGAAGGTCGTCTACGACAAGAAAATATGTGACTTGCTGGAGCAATACTCACAGGTGCTGATCTGCGTTGCAGACAATGTGGGATCCAAGCAGTTGCAGGGCATTCGTGCCGGGTTGAGGCCCGATTCGGTCGTTCTCATGGGGAAAAATACCATGATGAAGAGATCGATTCGGCTCTATGCAGAGAAGTCCGGGAACACAGCTTATCAGAACCTGATTCCTTTGCTGGTGGGAAATGTTGGTCTTATTTTCACAAAGGGTGACCTCAAGGAGGTGCGGGAGGAGGTAGCAAAATACAAGGTGGGAGCTCCAGCTCGTGTTGGTCTGGTTGCACCAGTTGATGTGGTTGTACCCCCCGGAAACACTGGTCTGGATCCATCTCAGACATCTTTCTTCCAGGTGTTAAATATTCCCACAAAGATTAACAAAGGTACTGTTGAAATTATAACACCCGTGGAGCTTATTAAGAAAGGAGACAAGGTTGGTTCTTCCGAGGCAGCTTTGCTGGCAAAGCTTGGCATTCGGCCATTTTCCTATGGATTGATTGTGCAGTCTGTATACGACAATGGATCGGTATTTGATCCTGAAGTTCTTGATCTCACAGAGGATGATTTAATAGAGAAATTTGCTGCTGGTATTTCTACTGTGACAGCTCTTTCTCTGGCGATCAGTTATCCCACAATTGCAGCTGTTCCACATGCTATCATCAATGGTTACAAGAATGTACTAGCAGTTGCTATTGAACTTGACTATTCTTTTCCACTGGCCGAGAAAGTTAAGGAGTATTTGAAGGATCCAAGCAAGTTTGCAGTTGCTGCTGCCCCAGTTGCCGGTGCTACAGAAGCTGCACCTGCTGCAGCTGCTCCAAAGGAAGAGGAAAAGAAACCTGAGCCAGAGGAAGAGTCCGAAGAGGATATGGGTTTCAGTCTTTTTGACTAG___ATTGGAGGATTGCACAGCACAAATCATTAGAATTGATAATTTTAAGACAATTGCTATTCTTCCATTCTGTTGCAGTGTCAGTCCACGAGGATTAGATTAGTATAATTTTTTAAAGTAGGTGTATATGTCTAGTCTGACGTTCTGTAGTTGAAGATACTGTTATATTGGGTTGCTTTAACGAGTAATTTGTGAGGTATCCAAAGTGTTGGTTGTTTTGTCATTGCAATTTTGTATTGAAACAGTTAAGTTATATATACTGAGCTCTATATCTCCGAAGGCA

Fln Alignment:

Contig1924___MGKNTMMKRSIRLYAEKSGNTAYQNLIPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARXXXXXXXXXXXXXGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLIVQSVYDNGSVFDPEVLDLTEDDLIEKFAAGISTVTALSLAISYPTIAAVPHAIINGYKNVLAVAIELDYSFPLAEKVKEYLKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMGFSLFD
D5A9F2_________________MGKNTMMKRSIRLYAEKSGNTAYQNLIPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFDPEVLDLTEDDLIEKFAAGISTVTALSLAISYPTIAAVPHAIINGYKNVLAIAIELDYSFPLAEKVKEYLKDPSKFAVAAAPVASATEAAPAAAAPKEEEKKPEPEEESEEDMGFSLFD

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
112	25			75	0.996473
113		75		25	0.996473
115	75		25		0.996473
117			25	75	0.996473
181	12	87			0.992554
183		87	12		0.992554
184		87	12		0.992554
185			12	87	0.992554
399		75		25	0.996473
411	75		25		0.996473
423			25	75	0.996473
427	75		25		0.996473
441		75		25	0.996473
456	25		75		0.996473
489	16	83			0.994512
495			83	16	0.994512
504		83		16	0.994512
534		20	80		0.995493
540			80	20	0.995493
543		20	80		0.995493
545	80			20	0.995493
551	80		20		0.995493
558		80	20		0.995493
567	80	20			0.995493
570		20		80	0.995493
573		20		80	0.995493
575	80			20	0.995493
592		80		20	0.995493
654	66	33			0.997452
657	66		33		0.997452
669			66	33	0.997452
714			33	66	1.0
723		25		75	0.996473
783	40		60		1.0
795	40		60		1.0
819		33		66	1.0
837	33		66		1.0
1514		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain