SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1922

Length: 885 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1922 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1029	16/19
SustainPine v2.0	sp_v2.0_unigene25640	3/19

Source	Descriptions	Term	Type	Identity
AutoFact	MADS-box protein n=3 Tax=Pinaceae RepID=O04406_PINRA	-	-	90%
FL-Next	tr=MADS-box protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	100%
Blast2go	mads-box protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	81%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	81%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	81%
Blast2go	nucleus	GO:0005634	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription factor, K-box	IPR002487	-	0.0	-
Sma3	Transcription factor, MADS-box	IPR002100	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
744		20		80	0.995493
746	20	80			0.995493
747		80		20	0.995493
781		33	66		0.997452
782	66	33			0.997452
786		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
724	738	TTC TTC TTC TTC TTC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain