SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1878

Length: 1229 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1878

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15519	108/108

Source	Descriptions	Term	Type	Identity
AutoFact	Ef-hand calcium binding protein, putative n=1 Tax=Ricinus communis RepID=B9T7A1_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	ef-hand calcium binding	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNQ9

Fln msg:

Fln protein: MSGYPNPPYGASAPPPNHYGAPPPNQYGQPPPNQYGQNAYGQKPHPPAPGGQQPYGYPPQPHGTPYAYPPAQPAFAPGTDPEIIRSFQMCDQDGSGFIDDKELQRALSSANQSFSIRTVHLLMFEFTRNNSMKIGPQEFTSLWHSLQAWRAIFERFDRDRSGKIESMELRDALLSLGYSVSQAILQILVSKYDKTGQSRGIDYDNFIECSLVVKGLTDKFKEKDKSYVGSATLTYEEYMQIVLPFIVA*

Protein Length: 250

Fln nts: CCAGCTCATATAAAGAGTTGAATCCAGACCCTACGACGCAAATAAACTGTCAATAAACTGCGTTTGAGATTTTGCGTTTCCCGTTCACTTTCTGCACGGATCGTAGCTCCAAATATAACCCACAGCCCACTCCCGGACCGAGGCACCGAATTCTTCTCTTTGTAGCTACTCCCTCACCG_-_ATGTCGGGATACCCAAATCCTCCCTATGGAGCTTCAGCTCCTCCTCCGAACCACTATGGCGCCCCTCCCCCTAACCAATACGGGCAGCCTCCCCCTAACCAGTATGGGCAGAACGCTTATGGCCAGAAGCCTCACCCTCCTGCTCCTGGAGGGCAACAGCCCTACGGCTACCCGCCTCAACCTCATGGAACTCCTTACGCATACCCTCCTGCACAGCCAGCATTTGCACCAGGTACTGACCCAGAAATCATAAGGTCTTTTCAGATGTGTGATCAAGATGGGAGCGGATTCATAGATGACAAAGAGTTGCAGAGGGCTTTGTCTTCTGCCAACCAATCATTCAGCATCCGGACAGTTCATCTCCTCATGTTCGAGTTCACCAGAAATAATTCCATGAAAATAGGGCCGCAGGAATTTACATCATTGTGGCACAGTCTCCAAGCGTGGCGGGCAATCTTTGAGAGGTTTGACAGAGATCGTAGTGGGAAGATTGAATCGATGGAATTGAGAGATGCGCTTCTTAGTTTGGGATATTCGGTATCACAGGCAATATTGCAAATTCTGGTTTCAAAATATGACAAGACAGGCCAATCCAGGGGAATTGATTATGATAACTTCATAGAGTGCAGCCTTGTTGTTAAGGGACTTACTGATAAGTTCAAGGAGAAAGACAAGAGTTATGTTGGCTCAGCCACTTTGACCTATGAGGAGTACATGCAAATAGTCTTACCATTTATTGTTGCCTAG___AGAGGTTTGACTTAATTATGATACCATAGTTGCATGTAGCTTTATTAGAAAGAGATTGTGCCGTGTGATAATAAAGGTTGCTCTTTTCGCATAGGATTTGTTTGACTTGCATTGTCTGGTTAAAATTGGTTACATGTAACAACTTAAAGAAATTCAATTGTGTCATTATACAGACACAGCGTAGTGTACTTGATGGAGTAATCATATTATCATCATCGCGCTGAGTATAACAGTATTGATAGGTAATTAGTTATTATGAATAGATAAGGTAGCATCTTTTGAGCTATGTTTTACGTTTCTTTG

Fln Alignment:

Contig1878___GTDPEIIRSFQMCDQDGSGFIDDKELQRALSSANQSFSIRTVHLLMFEFTRNNSMKIGPQEFTSLWHSLQAWRAIFERFDRDRSGKIESMELRDALLSLGYSVSQAILQILVSKYDKTGQSRGIDYDNFIECSLVVKGLTDKFKEKDKSYVGSATLTYEEYMQIVLPFIVA
B8LNQ9_________________GTDPEIIRSFQMCDQDGSGFIDDKELQRALSSASHSFSLRTVHLLMFEFTRNNSMKIGPQEFTSLWHSLQAWRAIFERFDRDRSGKIETMELRDALLSLGYSISPTILQTLVSKYDKTGQSRGIDYDNFIECSLVVKGLTDKFKEKDKSYVGSASLTYEEFMQIVLPFIVA

SNPs (tot: 3)

Position	A %	G %	T %	Probability
750	91		8	0.999807
751	91	8		0.999807
752	91	8		0.999807

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain