SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1875

Length: 1801 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1875

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15537	86/91
SustainPine v2.0	sp_v2.0_unigene16420	5/91

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) n=3 Tax=Vitis vinifera RepID=D7SM13_VITVI	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	rna binding	-	-	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ26

Fln msg: your sequence is longer than subject: 381 - 344

Fln protein: MTAYKRLQKRDVVLGCDRSAKVAFAESSIQPDEEQMAQVKSVFLDGLPASWDEERVKEELKKFGQIEKVQLSKNMASAKRKDFGFVHFATREEAQACVDSLTNSEIGEEDSKVKANIAKPQHKSRLVKQGVRGGYRVGEVKAEGNKGKKSRKMRNRGRNDRNRGRGPKSDKKKEKTTAPTEKQADPKRATKNDNVPKKKGDRDQGPRKSNVRDQNKSRGSSRTDTRRIPYANDRYSRHLERVHSYLDAPSRPYGGVSGSKRPYSALDDVPRYAEPDLRHSRARLDYDVSAGASLYGGTGYGRLGRAPQSGYSGQQSYGLYDTHQAGALGGAAVGGIYSPGYGTSSLPGRTDIGGGSYSSLYESRRSGSGYLLGRGSRGYY*

Protein Length: 382

Fln nts: CAAAATCGAGGCTTTGCATTCTTAGAGTTCACAAATCATCAATGTGCT_-_ATGACTGCGTACAAGCGCCTCCAAAAACGAGATGTTGTGTTAGGTTGTGACAGGAGTGCAAAGGTTGCGTTTGCTGAGTCTTCCATCCAGCCTGATGAGGAACAAATGGCACAGGTTAAGTCTGTTTTCCTTGATGGATTGCCCGCATCTTGGGATGAAGAGCGAGTTAAAGAGGAACTCAAGAAATTTGGTCAAATTGAGAAAGTACAATTATCGAAGAACATGGCCTCTGCCAAGCGTAAAGATTTTGGTTTTGTACATTTTGCTACTCGTGAAGAAGCTCAGGCTTGTGTTGATAGTCTCACTAACAGCGAGATTGGAGAGGAAGATAGTAAGGTAAAGGCTAATATTGCAAAGCCGCAACATAAGAGTAGGTTAGTTAAGCAAGGTGTTCGTGGAGGATATCGGGTTGGAGAAGTTAAAGCTGAAGGTAATAAGGGAAAGAAGTCTCGCAAAATGAGGAATCGTGGTCGTAATGATCGAAATCGTGGACGTGGACCTAAGAGTGACAAGAAAAAGGAGAAAACCACTGCACCTACAGAGAAGCAAGCTGATCCAAAACGTGCCACAAAGAACGATAATGTACCAAAGAAGAAAGGTGATCGTGATCAAGGTCCTAGGAAATCTAATGTTAGGGACCAGAATAAATCTCGGGGATCGTCAAGAACTGATACACGCAGGATCCCGTATGCTAATGATAGATATAGTCGCCATCTGGAACGTGTGCATAGTTATTTGGATGCGCCTAGCCGTCCTTATGGTGGAGTTTCTGGTTCAAAACGTCCATATTCTGCTCTGGATGATGTTCCAAGGTATGCAGAACCAGATTTAAGGCACTCGAGGGCACGCCTAGACTATGACGTTAGTGCTGGTGCTTCGCTTTATGGAGGCACCGGTTATGGCAGGCTTGGCAGAGCGCCCCAATCAGGTTACAGTGGTCAGCAATCTTATGGCTTATATGACACTCATCAAGCTGGCGCACTTGGAGGTGCGGCAGTTGGTGGAATTTACTCTCCGGGCTACGGCACCAGTTCTTTGCCAGGCAGGACTGATATTGGAGGTGGTTCATATTCTTCTCTGTATGAAAGCCGGAGATCAGGCAGTGGATATCTGTTGGGCCGTGGCTCAAGAGGATATTACTAG___AATATGAGTTTTTATGACAAGAGGCACTAGTCGGCCTAGGCTGGAGTAGATCTATATGCCTCTAGATCAATTATTTGGGTATCTTATGACCGGGCACAAGGAGAGATTATGCCTTATTGCATGGAGCTTCAGCTATCTGCCTTGAGTGGCATCTTTGCCATACGAGATTTTATATCTCATGGCTATGACAGATATCTTAAGATTGCGATAGTAATGCAGTATTAGATTGAACATGTCTGATTTATGATATTAAGGATAGTTCTTTTGGAAGTGAGGGAGAATCTAGAGAAGATTCAACAAACGATTTTTGTTATAAGCTGGGATTTGTGTTAAACCTTCTTCAAAGTTCATTGTTGGATGTAAAGCTTTAAATCTTCTAGATGAATTGAGAACCAGCTTGAACTTTTTAAATTTAGCTCTTTGGGCATCCTGTTTTAAATATAATGGATGTTCGCTTGATGCCCTAAATGGAGCTTTAAGACGCTCGAGTGGCTTTCCTGAACGTACACGTTTTAGCCACTTCTAAGAAGAAAACTTTTTTGGGCATATAATGGTGAACTGATTTTTGAAGCTGGCAAGTTGTCTTCTCAGTTACATAATAGATATGAGA

Fln Alignment:

Contig1875___PDEEQMAQVKSVFLDGLPASWDEERVKEELKKFGQIEKVQLSKNMASAKRKDFGFVHFATREEAQACVDSLTNSE---IGEEDSKVKANIAKPQHKSRLVKQGVRGGYRVGEVKAEGNKG
B8LQ26_________________PDEDVMEQVKSVFVDGLQPTWNEEKVKEHFGKFGEIERVVLACNIQSAKRKDFGFVNYTTREAAIACIEAFSKDDELIDGDSKVKVKVSLAKPSHKGKL-RKGKSKGTNKGDLKG-GSKG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
952	16	83			0.999991
960		83		16	0.999991
1023		25		75	1.0
1027	75		25		1.0
1131		88		11	0.923564
1314	11		88		0.923564
1337	71		28		1.0
1450		22	77		0.999999
1570	66	33			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain