SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1873

Length: 477 nt

UniGene Fasta

>biog2_v2.0_unigene1873
CGAGCGAAAGTGTTACGAGGAGGAGAGACAATAAAAAAGAAAGAAGGCAACTTCAGCATTTCCGCGACCAGAGGGGAATATGAAAAGCTAAAGGAAAACCTCACTCCCTGGGACTCGAACACGGAATCTCCAACAGCAGGATTCTTTTTGACGCTAGCTCTCAGGATTGGCGGGTGAACTTCTTTATAGCGTTATTTATCAGGCTGTTTTGGGATGCGGGATGGCGGGTTCCAAAAGCAATCTCTGGTTTTAGTCTCACGTCTTTTTAATACTGGTTCTGGTTTAATATTGTTGGGTTTCTGAAGTGAATTATGGAGATTAATACCATCAAGGATGCTTTTGACCGAGTTTCCAAGAGACAGAAGACGTCATACACAAAGACTCAGGACATAGTTGATTCAGTTGGAAAAGAAATTGAGCTTGCTTTGAATAAATTCTGAGTGCTTCAGAAGGCTCTGGTGTTGATCAGAATGCTGT

Ace file of the UniGene biog2_v2.0_unigene1873

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2218	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	LisH/CRA/RING-U-box domain-containing protein [Arabidopsis thaliana] emb\|CAB38936.1\| putative protein [Arabidopsis thaliana] emb\|CAB80453.1\| putative protein [Arabidopsis thaliana] gb\|AAV66093.1\| At4g37880 [Arabidopsis thaliana] gb\|AAX22273.1\| At4g37880 [	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	CRA domain	IPR013144	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8I0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 201 aas, your sequence is shorter than subject: 43 - 256

Fln protein: MEINTIKDAFDRVSKRQKTSYTKTQDIVDSVGKEIELALNKF*

Protein Length: 44

Fln nts: CGAGCGAAAGTGTTACGAGGAGGAGAGACAATAAAAAAGAAAGAAGGCAACTTCAGCATTTCCGCGACCAGAGGGGAATATGAAAAGCTAAAGGAAAACCTCACTCCCTGGGACTCGAACACGGAATCTCCAACAGCAGGATTCTTTTTGACGCTAGCTCTCAGGATTGGCGGGTGAACTTCTTTATAGCGTTATTTATCAGGCTGTTTTGGGATGCGGGATGGCGGGTTCCAAAAGCAATCTCTGGTTTTAGTCTCACGTCTTTTTAATACTGGTTCTGGTTTAATATTGTTGGGTTTCTGAAGTGAATT_-_ATGGAGATTAATACCATCAAGGATGCTTTTGACCGAGTTTCCAAGAGACAGAAGACGTCATACACAAAGACTCAGGACATAGTTGATTCAGTTGGAAAAGAAATTGAGCTTGCTTTGAATAAATTCTGAGTGCTTCAGAAGGCTCTGGTGTTGATCAGAATGCTGT

Fln Alignment:

Contig1873___MEINTIKDAFDRVSKRQKTSYTKTQDIVDSVGKEIELALNK
D5A8I0_________________MELNTIKDAFDRVSKRQKTSYTKTQDIIDSVGKEIELALNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain