SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1853

Length: 1333 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1853

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17217	67/69
SustainPine v2.0	sp_v2.0_unigene61478	2/69

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: AMME syndrome candidate gene 1 protein homolog [Monodelphis domestica]	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	ammecr1 protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMMECR1 domain	IPR002733	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ83

Fln msg:

Fln protein: MVSANKEMVVYCFDTLVAHYTGELVPPPAFDEGQHPLFVTWKKVVGGEPRLRGCIGTLEARCLFNGFKDYALTSALRDRRFSPIQAREIPYLECTVSILTDYEPAANHLDWEVGKHGMIMEFNDPDNTRRSATYLPEVAAQEGWTKTETIDSLMRKSGYMGPITESLRKRVRITRYQSTLYTMHYSDYVTFVKRTRGTAPLIGSRPYH*

Protein Length: 210

Fln nts: TCGCAGAGATTTTGATTCGGACTCCCTGCCCTCATCTCCAAACTTTAGGGTCCCATTTGACCCTAATATGCCCATTTCTCCTTTTTCATGGGATTTCCTTCAGCTCTACCCATTTTAACTCGGGTCCCCACACGCTTCCCTTTTTTATAATGGAGGCTTGCATTCATGGGCACGATTGACAGAAGAAGAATATTTGCCCAGAAGCGTTTTGGGAGTGGGGAGACGGGATACTCGGGACTTTTTGATCAATTGTTCTCTCCATTCCTCTTTATAAGAAGAAGAGCTGAAGATCTTCTCATAGTCCAAGGGATTTAGGAAGGAAAACAATCCCTGCATAGCTATGACGATCTGACGATTCCCGCATAGCATTTTTCTGGTATTTGTGCAGAGACCCTTTATCTGTGAAACCCGTGTTCGAATCGCGGGCTAGGTGAATTCGTGACGAGAAATTCATCCAAATCATACA_-_ATGGTGTCTGCAAACAAAGAAATGGTGGTGTACTGCTTTGACACTTTAGTGGCCCATTACACCGGCGAGCTTGTGCCTCCTCCTGCCTTTGACGAGGGTCAGCATCCATTATTTGTCACATGGAAAAAAGTTGTTGGCGGGGAGCCTCGTCTGAGAGGATGTATTGGTACATTGGAAGCCAGGTGTCTTTTTAATGGGTTCAAAGACTACGCTCTGACAAGTGCCCTGCGTGATCGCCGCTTTTCTCCAATACAAGCCAGAGAAATTCCATACCTGGAATGCACAGTATCTATCCTAACAGATTATGAGCCTGCAGCCAATCATCTAGATTGGGAGGTAGGAAAGCATGGCATGATTATGGAGTTTAATGATCCAGATAATACAAGGCGCAGTGCAACTTACTTGCCTGAAGTAGCCGCACAAGAAGGTTGGACAAAGACCGAGACAATTGATTCACTGATGCGCAAATCAGGGTATATGGGTCCTATTACCGAGTCTCTTCGCAAAAGAGTTCGCATCACACGTTACCAGAGCACTCTTTACACCATGCATTACAGTGACTATGTTACATTTGTAAAGAGAACAAGAGGAACTGCTCCTCTTATTGGATCGAGGCCCTATCATTAA___TGCGAGGGCTTCTTTCTGAAATAGATTATTACTTAAACATTAATGCCTTTTGGTTATGAACACAAGGGATCATTAAAATGATCCTCTTTTATTGACAGTGGGTTTGATTATTTTAAACTCCAAACCTTCTGCTAATCTCTTTTCCATTTCTTTGTAACACAAAAGGTATTGCTGACTGATAATACCTTCAGAAACAATTGATTTGTCAAGAATACCAGAATCAATGGGGCAATTGATTAC

Fln Alignment:

Contig1853___MVSANKEMVVYCFDTLVAHYTGELVPPPAFDEGQHPLFVTWKKVVGGEPRLRGCIGTLEARCLFNGFKDYALTSALRDRRFSPIQAREIPYLECTVSILTDYEPAANHLDWEVGKHGMIMEFNDPDNTRRSATYLPEVAAQEGWTKTETIDSLMRKSGYMGPITESLRKRVRITRYQSTLYTMHYSDYVTFVKRTRGTAPLIGSRPYH
A9NZ83_________________MVSANKEMVVYCFDTLVAHYTSELVPPPAFDEGQHPLFVTWKKVVGGEPRLRGCIGTLEARCLFNGFKDYALTSALRDRRFPPIQAREIPYLECTVSILTDYEPAANYLDWEVGKHGMIMEFSDPDNTRRSATYLPEVAAQEGWTKTETIDSLMRKSGYMGPITESLRKRVRITRYQSTLYTMHYSDYVTFVKKTRGAAPLIGTRPYH

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
501		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain