SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1833

Length: 911 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1833

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18452	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Putative ERD6-like transporter (Fragment) n=2 Tax=Vitis vinifera RepID=D7SPD1_VITVI	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	sugar transporter erd6-like 6-like	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	transporter activity	GO:0005215	Molecular Function	0.0	81%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK8

Fln msg: your sequence is shorter than subject: 250 - 502

Fln protein: SLQALRGSDADVSLEAVEIRSIMETGNQQSSIKISELFERRYALPLTIGIGLLLLQQLSGINGIMFYSSNIFKSAGISSSNAAYRGLGAIQVIMTAVAVWLMDKAGRRLLLMVSSGGMAVCLFLVSLSFYLKAHSGADSQYETFFTVLALVSLLIYIASFSLGVGAIPWIIMSEILPANVKGVGGSVATLSNWLTSWAITMTINLLLQWSSAGTFMIYAIVSALILVFVAVCVPETKGRTLEEIQSSFR*

Protein Length: 251

Fln nts: TCATTACAGGCTCTCCGAGGCTCTGATGCCGATGTTTCTCTAGAAGCAGTTGAAATCAGGAGTATCATGGAGACGGGCAATCAACAAAGTAGCATCAAGATATCAGAGCTTTTTGAGCGCAGATATGCACTGCCTTTGACCATTGGCATTGGACTGCTGCTTTTGCAGCAATTAAGTGGCATTAATGGTATCATGTTTTACAGCAGTAACATTTTCAAATCTGCAGGAATTTCATCTTCCAATGCTGCATACCGGGGACTTGGTGCCATCCAGGTCATCATGACTGCAGTTGCTGTATGGCTCATGGATAAAGCCGGACGACGTCTCCTCCTCATGGTCTCATCTGGGGGCATGGCCGTATGTCTCTTCCTCGTTAGTTTGTCATTTTACTTGAAGGCTCATTCTGGAGCAGATTCTCAATATGAAACATTCTTCACTGTTTTGGCTTTAGTGAGTCTGCTGATTTATATTGCGTCATTCTCACTTGGTGTTGGGGCCATCCCATGGATTATTATGTCTGAGATACTCCCTGCTAATGTCAAGGGTGTGGGCGGTAGTGTAGCGACTTTGTCAAATTGGTTGACATCATGGGCAATAACAATGACTATCAATTTACTTTTGCAGTGGAGCTCTGCAGGAACATTCATGATTTATGCTATTGTATCTGCTTTGATCCTGGTATTTGTGGCAGTGTGTGTGCCTGAAACAAAGGGACGGACTCTCGAAGAGATCCAATCGTCCTTCAGATGA___ATTGAATCCAGTCATCCTTTAGATGAATTGAATACCTTGAAAGTCAAATACAGCGCAAGCAATGAAATGGTTTATATATCCAGCCCCATTTCATCCTTCGAGTGCTTCCGAGTGTAAATTACATGTTAATAAATTGCGAATGTAAAAATATGATTCTTTTG

Fln Alignment:

Contig1833___SLQALRGSDADVSLEAVEIRSIMETGNQQSSIKISELFERRYAXXXXXXXXXXXXXXXXXXXXXMFYSSNIFKSAGISSSNAAYRGLGAIQVIMTAVAVWLMDKAGRRLLLMVSSGGMAVCLFLVSLSFYLKAHSGADSQYETFFTVLALVSLLIYIASFSLGVGAIPWIIMSEILPANVKGVGGSVATLSNWLTSWAITMTINLLLQWSSAGTFMIYAIVSALILVFVAVCVPETKGRTLEEIQSSFR
B8LLK8_________________SLRALRGPDADVSVEESEIKIAVETNYRQRGVKASDLLQQRYALPLTIGIGLLLLQQLSGINGIMFYSTYIFKSAGVSSSKVATLGLGAIQVVMTAFAAWLMDKAGRRLLLLISSGGTAICLFLVGLAFFLKNHVSGGS-HETGYSVLALTGVLVYIIAFSLGMGAVPWIIMSEILPVNVKGVGGSIATLTNWLTSFVVTMTINLLLEWSSSGTFWIYALVAAFTFVFVALWVPETKGRTLEEIQFSFQ

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
251	50	50			1.0
252		50		50	1.0
253		50	50		1.0
254			50	50	1.0
255			50	50	1.0
519		25		75	0.996473
533	25	75			0.996473
535	75		25		0.996473
536	75		25		0.996473
537			25	75	0.996473
597	60		20		0.99255
598	80		20		0.995493
599		80	20		0.995493
787		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain