SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1821

Length: 1032 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene1821 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19270	149/151
SustainPine v2.0	sp_v2.0_unigene70447	1/151

Source	Descriptions	Term	Type	e value	Identity
AutoFact	High mobility group protein n=1 Tax=Cucumis sativus RepID=Q4ZH67_CUCSA	-	-	6.0e-10	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	transcription factor	-	-	4.91721e-20	87%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000910	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
965	10		90		0.90298
976	87	12			0.992554
977	87	12			0.992554
978		12	87		0.992554
979	75	12			0.975346
981	87			12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain