SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene1817

Length: 949 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene1817

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15137	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03168, LEA_2, Late embryogenesis abundant protein	-	-	1.0e-07	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein ndr1-like	-	-	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Enolpyruvate transferase domain	IPR001986	-	0.0	-
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0D8

Fln msg: Overlapping hits, possible frame ERROR between 569 and 553,

Fln protein: MTDNQRVHPRMQDVEKNGGDNENELPNSPLVPRPISRPEKEGVRPPPGGRMSVQFPKDQVIPRRQIPRHDFQTSKRPRHSCCRCFCCTICFLLAFVVAIAIACDVLYLVFQPRIPKYSVNSIKITNFSINADLTTNCQFVVNVMARNPNxxxxxxxYLDNSHLAVSYSGTELCKGALPVFYQGHKNTTLLDVALSGTGARLSNALVSTLRKQKQKARVPLNLRAEVPVKIKLGKLKSMKIKVRVRWDLVVDRLDTKAKVISENSKVSVKL*

Protein Length: 272

Fln nts: AACTACTTTGTTGCTTTATCGGCTCCAATAGAGCTCAACATTCCCACGATAGGGTTTAGTCGGCGGCTATTAGTTATACTGGTTGCTCTGAGCGGTTTGGGACG_-_ATGACAGATAACCAGCGAGTGCACCCAAGGATGCAAGACGTGGAGAAAAATGGCGGCGATAATGAAAATGAGCTGCCGAACTCTCCATTGGTGCCAAGACCAATCTCGCGCCCTGAGAAAGAGGGGGTTAGGCCTCCTCCTGGAGGGCGGATGAGTGTTCAGTTCCCAAAAGACCAAGTCATACCAAGACGACAGATTCCCAGACACGACTTTCAGACTTCCAAGCGCCCCAGGCACTCCTGTTGCCGCTGCTTCTGCTGCACGATTTGCTTTCTATTAGCGTTCGTGGTAGCCATCGCCATTGCCTGTGACGTTCTGTATTTGGTCTTCCAGCCCAGGATCCCCAAATACTCTGTCAACAGCATCAAAATCACTAACTTCAGCATCAACGCCGACCTCACCACAAATTGCCAGTTCGTTGTGAATGTAATGGCCCGGAATCCGAACxxxxxxxxxxxxxxxxxxxxxTATCTTGACAACAGCCATCTCGCAGTTTCGTACTCGGGCACCGAGCTCTGCAAGGGCGCCTTGCCAGTATTCTACCAGGGACACAAGAACACCACTTTATTAGATGTGGCGCTCAGCGGCACTGGCGCTCGGCTTAGCAATGCCCTGGTCTCTACGCTCAGAAAGCAGAAGCAGAAGGCTAGGGTTCCCTTGAATTTGAGGGCCGAAGTGCCCGTGAAGATAAAATTGGGGAAATTGAAATCGATGAAGATAAAGGTCCGCGTGCGATGGGATCTGGTAGTTGACAGGCTTGATACCAAAGCCAAAGTTATCTCTGAGAATTCTAAAGTGAGCGTGAAGCTGTGA___GGGTTGCGATTCCAGATCCGTTCATGGCGGGTTT

Fln Alignment:

Contig1817___MTDNQRVHPRMQDVEKNGGDNENELPNSPLVPRPISRPEKEGVRPPP--GGRMSVQFPKDQVIPRRQIPRHDFQTSKRPRHSXXXXXXXXXXFLLAFVVAIAIACDVLYLVFQPRIPKYSVNSIKITNFSINADLTTNCQFVVNVMARNPNxxxxxxYLDNSHLAVSYSGTELCKGALPVFYQGHKNTTLLDVALSGTGARLSNALVSTLRKQKQKARVPLNLRAEVPVKIKLGKLKSMKIKXXXXXXXXXXXXXTKAKVISENSKVSVKL
A9P0D8_________________MADNQRVHPTMKDVEKNEVDYENEKPNSPLVPKSNLASEKDGVYPPPPSGGQMRVQFPKDQVIPTRQIPRYHSGPPKR-RNSCCRCLCCTICFLFALVAIIAIACGVLYLVFQPRIPKYSVDSIRITNFSINADLTTNCQVAVNVRARNPNxxxxxxYLDNSHLAISYMGTELCTGALPVFYQGHKNSTFLDVALSGTGARVTSAVVSTLKEQKQKASVPLNLRADVPVKIKLGKLKSMKIKVRVRWDLVVDRLDANAKVISEKSKVSVKM

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain